-
Notifications
You must be signed in to change notification settings - Fork 63
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Handle windows newlines on input files
- Loading branch information
1 parent
745aba5
commit 2faf322
Showing
4 changed files
with
470 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,52 @@ | ||
PRIMER_THERMODYNAMIC_OLIGO_ALIGNMENT=1 | ||
PRIMER_TM_FORMULA=1 | ||
PRIMER_SALT_CORRECTIONS=1 | ||
PRIMER_SALT_DIVALENT=1.5 | ||
PRIMER_MAX_SELF_ANY=12 | ||
PRIMER_PAIR_MAX_COMPL_ANY=12 | ||
PRIMER_MAX_POLY_X=100 | ||
PRIMER_MAX_SELF_END=8 | ||
PRIMER_PAIR_MAX_COMPL_END=8 | ||
P3_FILE_FLAG=1 | ||
PRIMER_EXPLAIN_FLAG=1 | ||
PRIMER_TASK=pick_pcr_primers | ||
PRIMER_DNTP_CONC=0.0 | ||
SEQUENCE_ID=pcr_primers | ||
SEQUENCE_TEMPLATE=TCCTACAGCTGTGGGAAAATGatgcgtacgatccatgctagctagctactatcgattagctatcatctactatcatctactatctactacacatctactatcatctacacacacacacacactaggccgctatatcatctagcGCCGCCATGTACACACTG | ||
SEQUENCE_TARGET=21,122 | ||
= | ||
SEQUENCE_ID=pcr_primers_and_io | ||
PRIMER_TASK=pick_pcr_primers_and_hyb_PROBE | ||
SEQUENCE_TEMPLATE=NATCCANGCTGTTTCACACTTACGGAAATGGANGACTNCCCATAGCTNCTGGGCTNTTATCCAAAAAACATTCTCTNNNTGNTGCTTATTGGCNTCTCNAAGTGTGCNNACTTCATGGGCCTACACANAATTGNNCANGGGCTTAGCGTGCGTGGGGTCCCTNGGTAACATNGGCATCTCTGCACTTCNNGGTNNCCTTCCTTCTNACCAAGGGGTATCTGGNTGCCAGTGGCTTTTCTCCAACAGGAANGGGGGTATGTGCATTNGCAGACATCAATGANCATGAGAGATATNAATAGG | ||
= | ||
SEQUENCE_ID=left_only | ||
PRIMER_TASK=pick_left_only | ||
SEQUENCE_TARGET=100,20 | ||
SEQUENCE_TEMPLATE=GNATCTGCACCCTGTAAACCCTGGCTCCTGCCTCTCCGGGACACCCCACTGAGGTCAGCACACCCTGCAGGTTTAGAAGGGGTGTCTGGGTGCATTTGGTGACACCGCAGGCAGAGGGGGGACNCCACAGCCAGCTCTGCCCGCGGATGCCACGTCCATTTGCTTCAGCAGGATC | ||
= | ||
SEQUENCE_ID=right_only | ||
PRIMER_TASK=PICK_right_only | ||
SEQUENCE_TARGET=90,10 | ||
SEQUENCE_TEMPLATE=GANCAATGCANGTAATGANGTTGGCANAATTATGAATCGCAATCAAATTTTTTCTATGACCTGATAGAAACGCCAACTCACTGTATGAGTCTGTTGTCAAAGTCTAACTTCCAAAACGCAAAGCACGCTCCCGATC | ||
= | ||
SEQUENCE_ID=hyb_probe_only | ||
PRIMER_TASK=pick_HYB_probe_ONly | ||
SEQUENCE_INTERNAL_EXCLUDED_REGION=90,20 | ||
SEQUENCE_TEMPLATE=GCATCTGCACCCTGTAAACCCTGGCTCCTGCCTCTCCGGGACACCCCACTGAGGTCAGCACACCCTGCAGGTTTAGAAGGGGTGTCTGGGTGCATTTGGTGACACCGCAGGCAGAGGGGGGACNCCACAGCCAGCTCTGCCCGCGGATGCCACGTCCATTTGCTTCAGCAGGATC | ||
= | ||
SEQUENCE_ID=left_only | ||
PRIMER_MIN_SIZE=20 | ||
PRIMER_MAX_SIZE=20 | ||
PRIMER_TASK=pick_left_only | ||
SEQUENCE_TEMPLATE=TTAGAAGGGGTGTCTGGGTG | ||
= | ||
SEQUENCE_ID=right_only | ||
PRIMER_TASK=pick_left_only | ||
SEQUENCE_TEMPLATE=TTAGAAGGGGTGTCTGGGTG | ||
= | ||
SEQUENCE_ID=hyb_probe_only | ||
PRIMER_INTERNAL_MIN_SIZE=20 | ||
PRIMER_INTERNAL_MAX_SIZE=20 | ||
PRIMER_TASK=pick_left_only | ||
SEQUENCE_TEMPLATE=TTAGAAGGGGTGTCTGGGTG | ||
= |
Oops, something went wrong.