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Test failure with FastTree 2.1.9 #102
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Hi Andreas, This is again an issue with being an unsupported version of an application. Unfortunately, @wasade is the maintainer of this and since he has indicated he has no time for updating other app controllers I suspect this applies to this one also. We would of course welcome any patches you might like to contribute to address this! BUT, please note the python 2 PyCogent series is in maintenance mode. PyCogent3 (python 3 compatible, available, but not yet released) has dropped all application controllers, amongst numerous other changes. This is because there are now a multitude of alternatives to application controllers than what PyCogent contains. cheers, gavin |
Hi Gavin, On Thu, Sep 15, 2016 at 05:23:47PM -0700, GavinHuttley wrote:
Thanks for the explanation - specifically about Pythono 2 series. I was
I would consider uploading a pycogent3 package to Debian experimental. Kind regards
|
cogent3 is the port of PyCogent to cogent3. Please see the cogent3 docs for a description of how this is differs from PyCogent. |
Hi,
I'm working on the pycogent packaging for Debian. When running the test suite with FastTree version 2.1.9 installed I get:
FAIL: test_build_tree_from_alignment (test_app.test_fasttree.FastTreeTests)
Traceback (most recent call last):
File "/build/python-cogent-1.9/tests/test_app/test_fasttree.py", line 50, in test_build_tree_from_alignment
self.assertEqual(o.Name,e.Name)
File "/build/python-cogent-1.9/cogent/util/unit_test.py", line 316, in failUnlessEqual
(msg or 'Got %s, but expected %s' % (
observed
,expected
))AssertionError: Got '0.409', but expected '0.466'
Kind regards
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