Error cannot convert float nan to int

[davide-f]

Description

When using atlite to create time series for New Zealand, the following error message is thrown for offwind calculations.

Error Message

Traceback (most recent call last):
  File "/home/davidef/miniconda3/envs/pypsa-earth/lib/python3.8/multiprocessing/pool.py", line 125, in worker
    result = (True, func(*args, **kwds))
  File "/home/davidef/miniconda3/envs/pypsa-earth/lib/python3.8/multiprocessing/pool.py", line 48, in mapstar
    return list(map(*args))
  File "/home/davidef/miniconda3/envs/pypsa-earth/lib/python3.8/site-packages/atlite/gis.py", line 537, in _process_func
    return shape_availability_reprojected(shapes.loc[[i]], *args)[0]
  File "/home/davidef/miniconda3/envs/pypsa-earth/lib/python3.8/site-packages/atlite/gis.py", line 512, in shape_availability_reprojected
    masked, transform = shape_availability(geometry, excluder)
  File "/home/davidef/miniconda3/envs/pypsa-earth/lib/python3.8/site-packages/atlite/gis.py", line 452, in shape_availability
    masked, transform = projected_mask(
  File "/home/davidef/miniconda3/envs/pypsa-earth/lib/python3.8/site-packages/atlite/gis.py", line 366, in projected_mask
    masked, transform_ = mask(raster, geom, crop=True, **kwargs)
  File "/home/davidef/miniconda3/envs/pypsa-earth/lib/python3.8/site-packages/rasterio/mask.py", line 178, in mask
    shape_mask, transform, window = raster_geometry_mask(
  File "/home/davidef/miniconda3/envs/pypsa-earth/lib/python3.8/site-packages/rasterio/mask.py", line 80, in raster_geometry_mask
    window = geometry_window(dataset, shapes, pad_x=pad_x, pad_y=pad_y)
  File "/home/davidef/miniconda3/envs/pypsa-earth/lib/python3.8/site-packages/rasterio/features.py", line 460, in geometry_window
    row_start, row_stop = int(math.floor(min(rows))), int(math.ceil(max(rows)))
ValueError: cannot convert float NaN to integer
"""

Your Environment

• The atlite version used:
• How you installed atlite (conda, pip or github): github
• Operating System: linux
• My environment:
  (output of `conda list`)

  ```

_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
brotlipy 0.7.0 py39hb9d737c_1004 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.18.1 h7f98852_0 conda-forge
ca-certificates 2022.9.24 ha878542_0 conda-forge
certifi 2022.9.24 pyhd8ed1ab_0 conda-forge
cffi 1.15.1 py39he91dace_0 conda-forge
charset-normalizer 2.1.1 pyhd8ed1ab_0 conda-forge
colorama 0.4.5 pyhd8ed1ab_0 conda-forge
conda 22.9.0 py39hf3d152e_0 conda-forge
conda-package-handling 1.9.0 py39hb9d737c_0 conda-forge
cryptography 37.0.1 py39h9ce1e76_0
icu 70.1 h27087fc_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
krb5 1.19.3 h3790be6_0 conda-forge
ld_impl_linux-64 2.36.1 hea4e1c9_2 conda-forge
libarchive 3.5.2 hb890918_3 conda-forge
libcurl 7.83.1 h7bff187_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libgcc-ng 12.1.0 h8d9b700_16 conda-forge
libgomp 12.1.0 h8d9b700_16 conda-forge
libiconv 1.17 h166bdaf_0 conda-forge
libmamba 0.25.0 hd8a31e3_2 conda-forge
libmambapy 0.25.0 py39hd55135b_2 conda-forge
libnghttp2 1.47.0 hdcd2b5c_1 conda-forge
libnsl 2.0.0 h7f98852_0 conda-forge
libsolv 0.7.22 h6239696_0 conda-forge
libsqlite 3.39.3 h753d276_0 conda-forge
libssh2 1.10.0 haa6b8db_3 conda-forge
libstdcxx-ng 12.1.0 ha89aaad_16 conda-forge
libuuid 2.32.1 h7f98852_1000 conda-forge
libxml2 2.10.2 h4c7fe37_1 conda-forge
libzlib 1.2.12 h166bdaf_3 conda-forge
lz4-c 1.9.3 h9c3ff4c_1 conda-forge
lzo 2.10 h516909a_1000 conda-forge
mamba 0.25.0 py39hfa8f2c8_2 conda-forge
ncurses 6.3 h27087fc_1 conda-forge
openssl 1.1.1q h166bdaf_0 conda-forge
pip 22.2.2 pyhd8ed1ab_0 conda-forge
pybind11-abi 4 hd8ed1ab_3 conda-forge
pycosat 0.6.3 py39hb9d737c_1010 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pyopenssl 22.0.0 pyhd8ed1ab_1 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
python 3.9.13 h9a8a25e_0_cpython conda-forge
python_abi 3.9 2_cp39 conda-forge
readline 8.1.2 h0f457ee_0 conda-forge
reproc 14.2.3 h7f98852_0 conda-forge
reproc-cpp 14.2.3 h9c3ff4c_0 conda-forge
requests 2.28.1 pyhd8ed1ab_1 conda-forge
ruamel_yaml 0.15.80 py39hb9d737c_1007 conda-forge
setuptools 65.4.0 pyhd8ed1ab_0 conda-forge
sqlite 3.39.3 h4ff8645_0 conda-forge
tk 8.6.12 h27826a3_0 conda-forge
toolz 0.12.0 pyhd8ed1ab_0 conda-forge
tqdm 4.64.1 pyhd8ed1ab_0 conda-forge
tzdata 2022d h191b570_0 conda-forge
urllib3 1.26.11 pyhd8ed1ab_0 conda-forge
wheel 0.37.1 pyhd8ed1ab_0 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
yaml 0.2.5 h7f98852_2 conda-forge
yaml-cpp 0.7.0 h27087fc_1 conda-forge
zstd 1.5.2 h6239696_4 conda-forge
(base) [davidef@dl580-cpu1 pypsa-earth]$ conda activate pypsa-earth
(pypsa-earth) [davidef@dl580-cpu1 pypsa-earth]$ conda list

packages in environment at /home/davidef/miniconda3/envs/pypsa-earth:

Name Version Build Channel

_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
affine 2.4.0 pyhd8ed1ab_0 conda-forge
aiofiles 22.1.0 pyhd8ed1ab_0 conda-forge
aiosqlite 0.18.0 pyhd8ed1ab_0 conda-forge
alsa-lib 1.2.8 h166bdaf_0 conda-forge
amply 0.1.5 pyhd8ed1ab_0 conda-forge
anyio 3.6.2 pyhd8ed1ab_0 conda-forge
appdirs 1.4.4 pyh9f0ad1d_0 conda-forge
argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 21.2.0 py38h0a891b7_3 conda-forge
asttokens 2.2.1 pyhd8ed1ab_0 conda-forge
atk-1.0 2.38.0 hd4edc92_1 conda-forge
atlite 0.2.6.dev240+ged11957 pypi_0 pypi
attr 2.5.1 h166bdaf_1 conda-forge
attrs 22.2.0 pyh71513ae_0 conda-forge
babel 2.11.0 pyhd8ed1ab_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 pyhd8ed1ab_3 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
beautifulsoup4 4.11.2 pyha770c72_0 conda-forge
bleach 6.0.0 pyhd8ed1ab_0 conda-forge
blosc 1.21.3 hafa529b_0 conda-forge
bokeh 2.4.3 pyhd8ed1ab_3 conda-forge
boost-cpp 1.78.0 h75c5d50_1 conda-forge
bottleneck 1.3.6 py38h7e4f40d_0 conda-forge
branca 0.6.0 pyhd8ed1ab_0 conda-forge
brotli 1.0.9 h166bdaf_8 conda-forge
brotli-bin 1.0.9 h166bdaf_8 conda-forge
brotlipy 0.7.0 py38h0a891b7_1005 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.18.1 h7f98852_0 conda-forge
ca-certificates 2022.12.7 ha878542_0 conda-forge
cairo 1.16.0 ha61ee94_1014 conda-forge
cartopy 0.21.1 py38h3d2c718_0 conda-forge
cdsapi 0.5.1 pypi_0 pypi
certifi 2022.12.7 pyhd8ed1ab_0 conda-forge
cffi 1.15.1 py38h4a40e3a_3 conda-forge
cfgv 3.3.1 pyhd8ed1ab_0 conda-forge
cfitsio 4.2.0 hd9d235c_0 conda-forge
cftime 1.6.2 py38h26c90d9_1 conda-forge
chaospy 4.3.10 pypi_0 pypi
charset-normalizer 2.1.1 pyhd8ed1ab_0 conda-forge
click 8.1.3 unix_pyhd8ed1ab_2 conda-forge
click-plugins 1.1.1 py_0 conda-forge
cligj 0.7.2 pyhd8ed1ab_1 conda-forge
cloudpickle 2.2.1 pyhd8ed1ab_0 conda-forge
coin-or-cbc 2.10.8 h3786ebc_0 conda-forge
coin-or-cgl 0.60.6 h6f57e76_2 conda-forge
coin-or-clp 1.17.7 hc56784d_2 conda-forge
coin-or-osi 0.108.7 h2720bb7_2 conda-forge
coin-or-utils 2.11.6 h202d8b1_2 conda-forge
coincbc 2.10.8 0_metapackage conda-forge
colorama 0.4.6 pyhd8ed1ab_0 conda-forge
colorcet 3.0.1 pyhd8ed1ab_0 conda-forge
comm 0.1.2 pyhd8ed1ab_0 conda-forge
conda 22.11.1 py38h578d9bd_1 conda-forge
conda-package-handling 2.0.2 pyh38be061_0 conda-forge
conda-package-streaming 0.7.0 pyhd8ed1ab_1 conda-forge
configargparse 1.5.3 pyhd8ed1ab_0 conda-forge
connection_pool 0.0.3 pyhd3deb0d_0 conda-forge
contextily 1.3.0 pyhd8ed1ab_0 conda-forge
country_converter 0.8.0 pyhd8ed1ab_0 conda-forge
countrycode 0.2 pypi_0 pypi
cryptography 39.0.1 py38h3d167d9_0 conda-forge
curl 7.87.0 hdc1c0ab_0 conda-forge
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
cytoolz 0.12.0 py38h0a891b7_1 conda-forge
dask 2023.2.0 pyhd8ed1ab_0 conda-forge
dask-core 2023.2.0 pyhd8ed1ab_0 conda-forge
datashader 0.14.4 pyh1a96a4e_0 conda-forge
datashape 0.5.4 py_1 conda-forge
datrie 0.8.2 py38h0a891b7_6 conda-forge
dbus 1.13.6 h5008d03_3 conda-forge
debugpy 1.6.6 py38h8dc9893_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
deprecation 2.1.0 pyh9f0ad1d_0 conda-forge
descartes 1.1.0 py_4 conda-forge
distlib 0.3.6 pyhd8ed1ab_0 conda-forge
distributed 2023.2.0 pyhd8ed1ab_0 conda-forge
docutils 0.19 py38h578d9bd_1 conda-forge
dpath 2.1.4 py38h578d9bd_0 conda-forge
earth-osm 0.0.8 pyhd8ed1ab_0 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
entsoe-py 0.5.9 pypi_0 pypi
et_xmlfile 1.1.0 pyhd8ed1ab_0 conda-forge
executing 1.2.0 pyhd8ed1ab_0 conda-forge
expat 2.5.0 h27087fc_0 conda-forge
fftw 3.3.10 nompi_hf0379b8_106 conda-forge
filelock 3.9.0 pyhd8ed1ab_0 conda-forge
fiona 1.9.1 py38h85a5e0f_0 conda-forge
flit-core 3.8.0 pyhd8ed1ab_0 conda-forge
fmt 9.1.0 h924138e_0 conda-forge
folium 0.14.0 pyhd8ed1ab_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.14.2 h14ed4e7_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.38.0 py38h0a891b7_1 conda-forge
freetype 2.12.1 hca18f0e_1 conda-forge
freexl 1.0.6 h166bdaf_1 conda-forge
fribidi 1.0.10 h36c2ea0_0 conda-forge
fsspec 2023.1.0 pyhd8ed1ab_0 conda-forge
future 0.18.3 pyhd8ed1ab_0 conda-forge
gdal 3.6.2 py38h58634bd_3 conda-forge
gdk-pixbuf 2.42.10 h05c8ddd_0 conda-forge
geographiclib 1.52 pyhd8ed1ab_0 conda-forge
geopandas 0.12.2 pyhd8ed1ab_0 conda-forge
geopandas-base 0.12.2 pyha770c72_0 conda-forge
geopy 2.3.0 pyhd8ed1ab_0 conda-forge
geos 3.11.1 h27087fc_0 conda-forge
geotiff 1.7.1 h7157cca_5 conda-forge
geoviews 1.9.6 pyhd8ed1ab_0 conda-forge
geoviews-core 1.9.6 pyha770c72_0 conda-forge
gettext 0.21.1 h27087fc_0 conda-forge
giflib 5.2.1 h36c2ea0_2 conda-forge
gitdb 4.0.10 pyhd8ed1ab_0 conda-forge
gitpython 3.1.30 pyhd8ed1ab_0 conda-forge
glib 2.74.1 h6239696_1 conda-forge
glib-tools 2.74.1 h6239696_1 conda-forge
glpk 5.0 h445213a_0 conda-forge
gmp 6.2.1 h58526e2_0 conda-forge
googledrivedownloader 0.4 pypi_0 pypi
graphite2 1.3.13 h58526e2_1001 conda-forge
graphviz 7.1.0 h2e5815a_0 conda-forge
gst-plugins-base 1.22.0 h4243ec0_0 conda-forge
gstreamer 1.22.0 h25f0c4b_0 conda-forge
gstreamer-orc 0.4.33 h166bdaf_0 conda-forge
gtk2 2.24.33 h90689f9_2 conda-forge
gts 0.7.6 h64030ff_2 conda-forge
gurobi 9.5.0 py38_0 gurobi
harfbuzz 6.0.0 h8e241bc_0 conda-forge
hdf4 4.2.15 h9772cbc_5 conda-forge
hdf5 1.12.2 nompi_h4df4325_101 conda-forge
heapdict 1.0.1 py_0 conda-forge
highspy 1.5.0.dev0 pypi_0 pypi
holoviews 1.15.4 pyhd8ed1ab_0 conda-forge
humanfriendly 10.0 py38h578d9bd_4 conda-forge
hvplot 0.8.2 pyhd8ed1ab_0 conda-forge
icu 70.1 h27087fc_0 conda-forge
identify 2.5.17 pyhd8ed1ab_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
importlib-metadata 6.0.0 pyha770c72_0 conda-forge
importlib_metadata 6.0.0 hd8ed1ab_0 conda-forge
importlib_resources 5.10.2 pyhd8ed1ab_0 conda-forge
ipopt 3.13.2 h7839693_1 conda-forge
ipykernel 6.21.1 pyh210e3f2_0 conda-forge
ipython 8.10.0 pyh41d4057_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
jack 1.9.22 h11f4161_0 conda-forge
jedi 0.18.2 pyhd8ed1ab_0 conda-forge
jinja2 3.1.2 pyhd8ed1ab_1 conda-forge
joblib 1.2.0 pyhd8ed1ab_0 conda-forge
jpeg 9e h0b41bf4_3 conda-forge
json-c 0.16 hc379101_0 conda-forge
json5 0.9.5 pyh9f0ad1d_0 conda-forge
jsonschema 4.17.3 pyhd8ed1ab_0 conda-forge
jupyter_client 8.0.2 pyhd8ed1ab_0 conda-forge
jupyter_core 5.2.0 py38h578d9bd_0 conda-forge
jupyter_events 0.5.0 pyhd8ed1ab_1 conda-forge
jupyter_server 2.2.1 pyhd8ed1ab_0 conda-forge
jupyter_server_fileid 0.6.0 pyhd8ed1ab_0 conda-forge
jupyter_server_terminals 0.4.4 pyhd8ed1ab_1 conda-forge
jupyter_server_ydoc 0.6.1 pyhd8ed1ab_0 conda-forge
jupyter_ydoc 0.2.2 pyhd8ed1ab_0 conda-forge
jupyterlab 3.6.1 pyhd8ed1ab_0 conda-forge
jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge
jupyterlab_server 2.19.0 pyhd8ed1ab_0 conda-forge
kealib 1.5.0 ha7026e8_0 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
kiwisolver 1.4.4 py38h43d8883_1 conda-forge
krb5 1.20.1 h81ceb04_0 conda-forge
lame 3.100 h166bdaf_1003 conda-forge
lcms2 2.14 hfd0df8a_1 conda-forge
ld_impl_linux-64 2.40 h41732ed_0 conda-forge
lerc 4.0.0 h27087fc_0 conda-forge
libaec 1.0.6 hcb278e6_1 conda-forge
libarchive 3.6.2 h3d51595_0 conda-forge
libblas 3.9.0 16_linux64_openblas conda-forge
libbrotlicommon 1.0.9 h166bdaf_8 conda-forge
libbrotlidec 1.0.9 h166bdaf_8 conda-forge
libbrotlienc 1.0.9 h166bdaf_8 conda-forge
libcap 2.66 ha37c62d_0 conda-forge
libcblas 3.9.0 16_linux64_openblas conda-forge
libclang 15.0.7 default_had23c3d_1 conda-forge
libclang13 15.0.7 default_h3e3d535_1 conda-forge
libcups 2.3.3 h36d4200_3 conda-forge
libcurl 7.87.0 hdc1c0ab_0 conda-forge
libdb 6.2.32 h9c3ff4c_0 conda-forge
libdeflate 1.17 h0b41bf4_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libevent 2.1.10 h28343ad_4 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libflac 1.4.2 h27087fc_0 conda-forge
libgcc-ng 12.2.0 h65d4601_19 conda-forge
libgcrypt 1.10.1 h166bdaf_0 conda-forge
libgd 2.3.3 h5aea950_4 conda-forge
libgdal 3.6.2 h10cbb15_3 conda-forge
libgfortran-ng 12.2.0 h69a702a_19 conda-forge
libgfortran5 12.2.0 h337968e_19 conda-forge
libglib 2.74.1 h606061b_1 conda-forge
libgomp 12.2.0 h65d4601_19 conda-forge
libgpg-error 1.46 h620e276_0 conda-forge
libiconv 1.17 h166bdaf_0 conda-forge
libkml 1.3.0 h37653c0_1015 conda-forge
liblapack 3.9.0 16_linux64_openblas conda-forge
liblapacke 3.9.0 16_linux64_openblas conda-forge
libllvm10 10.0.1 he513fc3_3 conda-forge
libllvm15 15.0.7 hadd5161_0 conda-forge
libmamba 1.3.1 hcea66bb_1 conda-forge
libmambapy 1.3.1 py38h7fa060d_1 conda-forge
libnetcdf 4.8.1 nompi_h261ec11_106 conda-forge
libnghttp2 1.51.0 hff17c54_0 conda-forge
libnsl 2.0.0 h7f98852_0 conda-forge
libogg 1.3.4 h7f98852_1 conda-forge
libopenblas 0.3.21 pthreads_h78a6416_3 conda-forge
libopus 1.3.1 h7f98852_1 conda-forge
libpng 1.6.39 h753d276_0 conda-forge
libpq 15.2 hb675445_0 conda-forge
libprotobuf 3.21.12 h3eb15da_0 conda-forge
librsvg 2.54.4 h7abd40a_0 conda-forge
librttopo 1.1.0 ha49c73b_12 conda-forge
libsndfile 1.2.0 hb75c966_0 conda-forge
libsodium 1.0.18 h36c2ea0_1 conda-forge
libsolv 0.7.23 h3eb15da_0 conda-forge
libspatialindex 1.9.3 h9c3ff4c_4 conda-forge
libspatialite 5.0.1 h7c8129e_22 conda-forge
libsqlite 3.40.0 h753d276_0 conda-forge
libssh2 1.10.0 hf14f497_3 conda-forge
libstdcxx-ng 12.2.0 h46fd767_19 conda-forge
libsystemd0 252 h2a991cd_0 conda-forge
libtiff 4.5.0 h6adf6a1_2 conda-forge
libtool 2.4.7 h27087fc_0 conda-forge
libudev1 252 h166bdaf_0 conda-forge
libuuid 2.32.1 h7f98852_1000 conda-forge
libvorbis 1.3.7 h9c3ff4c_0 conda-forge
libwebp 1.2.4 h1daa5a0_1 conda-forge
libwebp-base 1.2.4 h166bdaf_0 conda-forge
libxcb 1.13 h7f98852_1004 conda-forge
libxkbcommon 1.0.3 he3ba5ed_0 conda-forge
libxml2 2.10.3 h7463322_0 conda-forge
libxslt 1.1.37 h873f0b0_0 conda-forge
libzip 1.9.2 hc929e4a_1 conda-forge
libzlib 1.2.13 h166bdaf_4 conda-forge
linopy 0.1.3 pyhd8ed1ab_0 conda-forge
llvmlite 0.36.0 py38h4630a5e_0 conda-forge
locket 1.0.0 pyhd8ed1ab_0 conda-forge
lxml 4.9.2 py38h215a2d7_0 conda-forge
lz4 4.3.2 py38hd012fdc_0 conda-forge
lz4-c 1.9.4 hcb278e6_0 conda-forge
lzo 2.10 h516909a_1000 conda-forge
mamba 1.3.1 py38haad2881_1 conda-forge
mapclassify 2.5.0 pyhd8ed1ab_1 conda-forge
markdown 3.4.1 pyhd8ed1ab_0 conda-forge
markupsafe 2.1.2 py38h1de0b5d_0 conda-forge
matplotlib 3.5.2 py38h578d9bd_1 conda-forge
matplotlib-base 3.5.2 py38h826bfd8_1 conda-forge
matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge
memory_profiler 0.61.0 pyhd8ed1ab_0 conda-forge
mercantile 1.2.1 pyhd8ed1ab_0 conda-forge
metis 5.1.0 h58526e2_1006 conda-forge
mistune 2.0.5 pyhd8ed1ab_0 conda-forge
mpg123 1.31.2 hcb278e6_0 conda-forge
msgpack-python 1.0.4 py38h43d8883_1 conda-forge
multipledispatch 0.6.0 py_0 conda-forge
munch 2.5.0 py_0 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
mysql-common 8.0.32 ha901b37_0 conda-forge
mysql-libs 8.0.32 hd7da12d_0 conda-forge
nbclassic 0.5.1 pyhd8ed1ab_0 conda-forge
nbclient 0.7.2 pyhd8ed1ab_0 conda-forge
nbconvert 7.2.9 pyhd8ed1ab_0 conda-forge
nbconvert-core 7.2.9 pyhd8ed1ab_0 conda-forge
nbconvert-pandoc 7.2.9 pyhd8ed1ab_0 conda-forge
nbformat 5.7.3 pyhd8ed1ab_0 conda-forge
ncurses 6.3 h27087fc_1 conda-forge
nest-asyncio 1.5.6 pyhd8ed1ab_0 conda-forge
netcdf4 1.6.2 nompi_py38h2250339_100 conda-forge
networkx 3.0 pyhd8ed1ab_0 conda-forge
nodeenv 1.7.0 pyhd8ed1ab_0 conda-forge
nomkl 1.0 h5ca1d4c_0 conda-forge
notebook 6.5.2 pyha770c72_1 conda-forge
notebook-shim 0.2.2 pyhd8ed1ab_0 conda-forge
nspr 4.35 h27087fc_0 conda-forge
nss 3.88 he45b914_0 conda-forge
numba 0.53.1 py38ha9443f7_0
numexpr 2.8.3 py38h36ff5c2_101 conda-forge
numpoly 1.2.5 pypi_0 pypi
numpy 1.24.2 py38h10c12cc_0 conda-forge
openjpeg 2.5.0 hfec8fc6_2 conda-forge
openpyxl 3.1.0 py38h1de0b5d_0 conda-forge
openssl 3.0.8 h0b41bf4_0 conda-forge
packaging 23.0 pyhd8ed1ab_0 conda-forge
pandas 1.5.3 py38hdc8b05c_0 conda-forge
pandoc 2.19.2 h32600fe_1 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
panel 0.14.3 pyhd8ed1ab_0 conda-forge
pango 1.50.12 hd33c08f_1 conda-forge
param 1.12.3 pyh1a96a4e_0 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
partd 1.3.0 pyhd8ed1ab_0 conda-forge
patsy 0.5.3 pyhd8ed1ab_0 conda-forge
pcre2 10.40 hc3806b6_0 conda-forge
pexpect 4.8.0 pyh1a96a4e_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 9.4.0 py38hde6dc18_1 conda-forge
pip 23.0 pyhd8ed1ab_0 conda-forge
pixman 0.40.0 h36c2ea0_0 conda-forge
pkgutil-resolve-name 1.3.10 pyhd8ed1ab_0 conda-forge
plac 1.3.5 pyhd8ed1ab_0 conda-forge
platformdirs 3.0.0 pyhd8ed1ab_0 conda-forge
pluggy 1.0.0 pyhd8ed1ab_5 conda-forge
ply 3.11 py_1 conda-forge
pooch 1.6.0 pyhd8ed1ab_0 conda-forge
poppler 22.12.0 h091648b_1 conda-forge
poppler-data 0.4.12 hd8ed1ab_0 conda-forge
postgresql 15.2 h3248436_0 conda-forge
powerplantmatching 0.5.6 pypi_0 pypi
pre-commit 3.0.4 py38h578d9bd_0 conda-forge
progressbar2 4.2.0 pypi_0 pypi
proj 9.1.0 h8ffa02c_1 conda-forge
prometheus_client 0.16.0 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.36 pyha770c72_0 conda-forge
protobuf 4.21.12 py38h8dc9893_0 conda-forge
psutil 5.9.4 py38h0a891b7_0 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pulp 2.7.0 py38h578d9bd_0 conda-forge
pulseaudio 16.1 ha8d29e2_1 conda-forge
pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge
pybind11 2.10.3 pypi_0 pypi
pybind11-abi 4 hd8ed1ab_3 conda-forge
pycosat 0.6.4 py38h0a891b7_1 conda-forge
pycountry 22.3.5 pypi_0 pypi
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pyct 0.4.6 py_0 conda-forge
pyct-core 0.4.6 py_0 conda-forge
pydoe2 1.3.0 py_0 conda-forge
pygments 2.14.0 pyhd8ed1ab_0 conda-forge
pyomo 6.4.4 py38h8dc9893_0 conda-forge
pyopenssl 23.0.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge
pyproj 3.4.1 py38hf928c62_0 conda-forge
pypsa 0.22.0 pyhd8ed1ab_1 conda-forge
pyqt 5.15.7 py38ha0d8c90_3 conda-forge
pyqt5-sip 12.11.0 py38h8dc9893_3 conda-forge
pyrsistent 0.19.3 py38h1de0b5d_0 conda-forge
pyshp 2.3.1 pyhd8ed1ab_0 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
pytables 3.7.0 py38hf134f34_3 conda-forge
python 3.8.16 he550d4f_1_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-fastjsonschema 2.16.2 pyhd8ed1ab_0 conda-forge
python-json-logger 2.0.4 pyhd8ed1ab_0 conda-forge
python-utils 3.5.2 pypi_0 pypi
python_abi 3.8 3_cp38 conda-forge
pytz 2022.7.1 pyhd8ed1ab_0 conda-forge
pyviz_comms 2.2.1 pyhd8ed1ab_1 conda-forge
pyyaml 6.0 py38h0a891b7_5 conda-forge
pyzmq 25.0.0 py38he24dcef_0 conda-forge
qt-main 5.15.8 h5d23da1_6 conda-forge
rasterio 1.3.4 py38h485b76c_0 conda-forge
readline 8.1.2 h0f457ee_0 conda-forge
reproc 14.2.4 h0b41bf4_0 conda-forge
reproc-cpp 14.2.4 hcb278e6_0 conda-forge
requests 2.28.2 pyhd8ed1ab_0 conda-forge
reretry 0.11.8 pyhd8ed1ab_0 conda-forge
reverse-geocode 1.4.1 pyhd8ed1ab_0 conda-forge
rioxarray 0.13.3 pyhd8ed1ab_0 conda-forge
rtree 1.0.1 py38h02d302b_1 conda-forge
ruamel.yaml 0.17.21 py38h0a891b7_2 conda-forge
ruamel.yaml.clib 0.2.7 py38h1de0b5d_1 conda-forge
scikit-learn 1.2.1 py38h1e1a916_0 conda-forge
scipy 1.10.0 py38h10c12cc_2 conda-forge
seaborn 0.12.2 hd8ed1ab_0 conda-forge
seaborn-base 0.12.2 pyhd8ed1ab_0 conda-forge
send2trash 1.8.0 pyhd8ed1ab_0 conda-forge
setuptools 67.1.0 pyhd8ed1ab_0 conda-forge
shapely 2.0.1 py38hd07e089_0 conda-forge
sip 6.7.7 py38h8dc9893_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
smart_open 6.3.0 pyhd8ed1ab_1 conda-forge
smmap 3.0.5 pyh44b312d_0 conda-forge
snakemake-minimal 7.22.0 pyhdfd78af_0 bioconda
snappy 1.1.9 hbd366e4_2 conda-forge
sniffio 1.3.0 pyhd8ed1ab_0 conda-forge
snuggs 1.4.7 py_0 conda-forge
sortedcontainers 2.4.0 pyhd8ed1ab_0 conda-forge
soupsieve 2.3.2.post1 pyhd8ed1ab_0 conda-forge
sqlite 3.40.0 h4ff8645_0 conda-forge
stack_data 0.6.2 pyhd8ed1ab_0 conda-forge
statsmodels 0.13.5 py38h26c90d9_2 conda-forge
stopit 1.1.2 py_0 conda-forge
tabulate 0.9.0 pyhd8ed1ab_1 conda-forge
tbb 2020.3 hfd86e86_0
tblib 1.7.0 pyhd8ed1ab_0 conda-forge
terminado 0.17.1 pyh41d4057_0 conda-forge
threadpoolctl 3.1.0 pyh8a188c0_0 conda-forge
throttler 1.2.1 pyhd8ed1ab_0 conda-forge
tiledb 2.13.2 hd532e3d_0 conda-forge
tinycss2 1.2.1 pyhd8ed1ab_0 conda-forge
tk 8.6.12 h27826a3_0 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
toolz 0.12.0 pyhd8ed1ab_0 conda-forge
toposort 1.9 pyhd8ed1ab_0 conda-forge
tornado 6.2 py38h0a891b7_1 conda-forge
tqdm 4.64.1 pyhd8ed1ab_0 conda-forge
traitlets 5.9.0 pyhd8ed1ab_0 conda-forge
tsam 2.2.2 pypi_0 pypi
typing-extensions 4.4.0 hd8ed1ab_0 conda-forge
typing_extensions 4.4.0 pyha770c72_0 conda-forge
tzcode 2022g h166bdaf_0 conda-forge
tzdata 2022g h191b570_0 conda-forge
ukkonen 1.0.1 py38h43d8883_3 conda-forge
unicodedata2 15.0.0 py38h0a891b7_0 conda-forge
unidecode 1.3.6 pypi_0 pypi
urllib3 1.26.14 pyhd8ed1ab_0 conda-forge
virtualenv 20.19.0 pyhd8ed1ab_0 conda-forge
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wcwidth 0.2.6 pyhd8ed1ab_0 conda-forge
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xarray 2023.1.0 pyhd8ed1ab_0 conda-forge
xcb-util 0.4.0 h516909a_0 conda-forge
xcb-util-image 0.4.0 h166bdaf_0 conda-forge
xcb-util-keysyms 0.4.0 h516909a_0 conda-forge
xcb-util-renderutil 0.3.9 h166bdaf_0 conda-forge
xcb-util-wm 0.4.1 h516909a_0 conda-forge
xerces-c 3.2.4 h55805fa_1 conda-forge
xlrd 2.0.1 pyhd8ed1ab_3 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.0.10 h7f98852_0 conda-forge
xorg-libsm 1.2.3 hd9c2040_1000 conda-forge
xorg-libx11 1.7.2 h7f98852_0 conda-forge
xorg-libxau 1.0.9 h7f98852_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h7f98852_1 conda-forge
xorg-libxrender 0.9.10 h7f98852_1003 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h7f98852_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xyzservices 2022.9.0 pyhd8ed1ab_0 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
y-py 0.5.5 py38h9fda977_2 conda-forge
yaml 0.2.5 h7f98852_2 conda-forge
yaml-cpp 0.7.0 h27087fc_2 conda-forge
ypy-websocket 0.8.2 pyhd8ed1ab_0 conda-forge
yte 1.5.1 py38h578d9bd_1 conda-forge
zeromq 4.3.4 h9c3ff4c_1 conda-forge
zict 2.2.0 pyhd8ed1ab_0 conda-forge
zipp 3.13.0 pyhd8ed1ab_0 conda-forge
zlib 1.2.13 h166bdaf_4 conda-forge
zstandard 0.19.0 py38h5945529_1 conda-forge
zstd 1.5.2 h3eb15da_6 conda-forge
```

[euronion]

Can't reproduce, sorry. Closing for now. If you encounter it again feel free to re-open the issue.

[davide-f]

Hello!
Actually it appeared again using pypsa-meets-earth/pypsa-earth#701 on NZ...
I may have to create again the cutout

[euronion]

Is it the same cutout with which you encounter the problem in the first place? Or already a new one?

[davide-f]

Again many thanks for the quick reply! :)

Indeed it is the same cutout. I would do other checks and let you know.
In particular, the tests may be:

1. Recreate the cutout for the whole earth again
2. Create a NZ-specific cutout
   All of them using the latest version of the repository.

@euronion could you confirm that some compression is already included in the new version?

Ah, as a little comment: in conda/pip the version .11 is available bit no .11 tag is available in github

[euronion]

Compression is included in the 0.2.11 version, yes. But don't expect significant gains unless you stitched together the world cutout by hand before. ERA5 data is already nicely compressed.

@FabianHofmann did the last release; I can see a tag, but no GitHub release. @FabianHofmann could you check?

[FabianHofmann]

@euronion @davide-f I made a new GH release for 2.1. Most likely not related but note @davide-f that #242 (fixing nan's in hydro calculation) did not make into this release. On the other hand, #289 should fix this mentioned issue. Did you make sure version 0.2.11 is installed?

[davide-f]

@FabianHofmann yeah, I confirm that 0.2.11 is installed.
I also recently re-created the whole cutout with the new version and the error persists unfortunately

[euronion]

Can you reproduce the issue with an MWE? Or only inside the workflow?

[davide-f]

This problem with a custom environment is not appearing.
It may be related to xarray: with the v2023 some errors in the workflow have disappeared, not sure why. Now NZ is working.
This problems may be related for some reason with xarray or another package

[euronion]

Alright, let's keep an eye out for it. If we can track it down again it would be nice to have an test in the CI.