TST: GitHub actions

.github/workflows/docs.yml

@@ -0,0 +1,42 @@
+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: Documentation Check
+
+on: [push, pull_request]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: [3.9]
+
+    name: Documentation tests
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v2
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install -r test_requirements.txt
+        pip install -r requirements.txt
+
+    - name: Set up pysat
+      run: |
+        mkdir pysatData
+        python -c "import pysat; pysat.params['data_dirs'] = './pysatData'"
+
+    - name: Check documentation build
+      run: sphinx-build -E -b html docs dist/docs
+
+    - name: Check documentation links
+      run: sphinx-build -b linkcheck docs dist/docs
+
+    - name: Load .zenodo.json to check for errors
+      run: python -c "import json; json.loads(open('.zenodo.json').read())"

.github/workflows/main.yml

@@ -0,0 +1,59 @@
+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: Pytest with Flake8
+
+on: [push, pull_request]
+
+jobs:
+  build:
+
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest]
+        python-version: ["3.9", "3.10"]
+        numpy_ver: ["latest"]
+        include:
+          - python-version: "3.8"
+            numpy_ver: "1.19"
+            os: ubuntu-latest
+
+    name: Python ${{ matrix.python-version }} on ${{ matrix.os }} with numpy ${{ matrix.numpy_ver }}
+    runs-on: ${{ matrix.os }}
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v2
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Install standard dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install -r test_requirements.txt
+        pip install -r requirements.txt;
+
+    - name: Install NEP29 dependencies
+      if: ${{ matrix.numpy_ver != 'latest'}}
+      run: |
+        pip install --no-binary :numpy: numpy==${{ matrix.numpy_ver }}
+
+    - name: Set up pysat
+      run: |
+        mkdir pysatData
+        python -c "import pysat; pysat.params['data_dirs'] = 'pysatData'"
+
+    - name: Test PEP8 compliance
+      run: flake8 . --count --select=E,F,W --show-source --statistics
+
+    - name: Evaluate complexity
+      run: flake8 . --count --exit-zero --max-complexity=10 --statistics
+
+    - name: Test with pytest
+      run: pytest --cov=pysatMadrigal/
+
+    - name: Publish results to coveralls
+      env:
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      run: coveralls --rcfile=setup.cfg --service=github

CHANGELOG.md

@@ -16,6 +16,7 @@ This project adheres to [Semantic Versioning](https://semver.org/).
 
 ## [0.0.4] - 2021-06-11
 - Made changes to structure to comply with updates in pysat 3.0.0
+- Migrated CI tests from Travis CI to GitHub Actions
 - Deprecations
   - Restructed Instrument methods, moving `madrigal` to `general` and extracting
     local methods from the instrument modules to platform-specific method files

README.md

@@ -5,7 +5,7 @@
 
 # pysatMadrigal
 [![Documentation Status](https://readthedocs.org/projects/pysatmadrigal/badge/?version=latest)](https://pysatmadrigal.readthedocs.io/en/latest/?badge=latest)
-[![Build Status](https://travis-ci.org/pysat/pysatMadrigal.svg?branch=main)](https://travis-ci.com/pysat/pysatMadrigal)
+[![Build Status](https://github.com/github/docs/actions/workflows/main.yml/badge.svg)](https://github.com/github/docs/actions/workflows/main.yml/badge.svg)
 [![Coverage Status](https://coveralls.io/repos/github/pysat/pysatMadrigal/badge.svg?branch=main)](https://coveralls.io/github/pysat/pysatMadrigal?branch=main)
 [![DOI](https://zenodo.org/badge/258384773.svg)](https://zenodo.org/badge/latestdoi/258384773)
 [![PyPI version](https://badge.fury.io/py/pysatMadrigal.svg)](https://badge.fury.io/py/pysatMadrigal)

setup.cfg

@@ -41,15 +41,10 @@ setup_requires = setuptools >= 38.6; pip >= 10
 include_package_data = True
 zip_safe = False
 packages = find:
-install_requires = h5py
-		   madrigalWeb
-		   numpy
-		   pandas
-		   pysat
-		   xarray
+install_requires = file: requirements.txt
 
 [coverage:report]
-omit = */instruments/templates/
+omit = */instruments/templates/*
 
 [flake8]
 max-line-length = 80
@@ -62,4 +57,3 @@ markers =
     no_download: tests for instruments without download support
     first: first tests to run
     second: second tests to run
-

test_requirements.txt

@@ -1,4 +1,4 @@
-coveralls
+coveralls<3.3
 flake8
 m2r2
 numpydoc