Merge pull request #162 from alubbock/fix_annotations

Correct Annotation tags' argument order (subject, object, predicate)
pysb · Sep 28, 2015 · e48ade3 · e48ade3
2 parents 3a4d364 + 0275c9f
commit e48ade3
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diff --git a/pysb/examples/earm_1_0.py b/pysb/examples/earm_1_0.py
@@ -11,9 +11,9 @@
 from pysb import *
 
 Model()
-Annotation(model, 'is', 'http://identifiers.org/biomodels.db/BIOMD0000000220')
-Annotation(model, 'isDescribedBy',
-           'http://identifiers.org/doi/10.1371/journal.pbio.0060299')
+Annotation(model, 'http://identifiers.org/biomodels.db/BIOMD0000000220', 'is')
+Annotation(model, 'http://identifiers.org/doi/10.1371/journal.pbio.0060299',
+           'isDescribedBy')
 
 transloc = .01; # rate of translocation between the cytosolic and mitochondrial compartments
 

diff --git a/pysb/examples/earm_1_3.py b/pysb/examples/earm_1_3.py
@@ -21,8 +21,8 @@
 # Start from EARM 1.0 as a base
 # ==========
 Model(base=pysb.examples.earm_1_0.model)
-Annotation(model, 'isDescribedBy',
-           'http://identifiers.org/doi/10.1371/journal.pcbi.1002482')
+Annotation(model, 'http://identifiers.org/doi/10.1371/journal.pcbi.1002482',
+           'isDescribedBy')
 
 # Rename all instances of Bcl2c to Mcl1, which was determined as a more accurate
 # description of that monomer based on its role in the model