Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

KappaSimulator #447

Merged
merged 8 commits into from Oct 7, 2019
Merged

KappaSimulator #447

merged 8 commits into from Oct 7, 2019

Commits on Jun 28, 2019

  1. KappaSimulator 

    A simulation engine for Kappa built on the PySB Simulator class.
Supports multiple realizations, and multiple initial condition
and parameter sets.
    @alubbock
    alubbock committed Jun 28, 2019
    Copy the full SHA
    2043ebe View commit details
    Browse the repository at this point in the history

  2. Fix KappaSimulator doctest

    @alubbock
    alubbock committed Jun 28, 2019
    Copy the full SHA
    c7f4c13 View commit details
    Browse the repository at this point in the history

  3. Handle case where KaSim returns 1 time point

    @alubbock
    alubbock committed Jun 28, 2019
    Copy the full SHA
    ef4ac75 View commit details
    Browse the repository at this point in the history

Commits on Jul 9, 2019

  1. Make Kappa simulator work with or without network 

    Kappa simulator (and other network-free simulators) should work
regardless of whether generate_equations() has been called on
the model.
    @alubbock
    alubbock committed Jul 9, 2019
    Copy the full SHA
    c3da02d View commit details
    Browse the repository at this point in the history

Commits on Sep 25, 2019

  1. Merge branch 'master' into kappa_simulator

    @alubbock
    alubbock committed Sep 25, 2019
    Copy the full SHA
    f939e4c View commit details
    Browse the repository at this point in the history

Commits on Oct 7, 2019

  1. One-line shorter syntax tweak

    @alubbock
    alubbock committed Oct 7, 2019
    Copy the full SHA
    3d8a384 View commit details
    Browse the repository at this point in the history

  2. KappaSimulator perturbation support

    @alubbock
    alubbock committed Oct 7, 2019
    Copy the full SHA
    72806af View commit details
    Browse the repository at this point in the history

  3. Deprecate run_simulation in favour of KappaSimulator

    @alubbock
    alubbock committed Oct 7, 2019
    Copy the full SHA
    f92311b View commit details
    Browse the repository at this point in the history