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Thanks for reporting this! This is a library stub problem and stubs now live in https://github.com/python/typeshed. Would you mind creating an issue at typeshed?
In Python 3.5.1, deque should be a MutableSequence (https://bugs.python.org/issue23704)
By mypy does not recognise it as such
error: Incompatible types in assignment (expression has type deque[None], variable has type MutableSequence[Any])
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