[BUG][OCTAVE] Fix bug caused by a recent added dependecy of optim on …

…the statistics toolbox (#257)

* [TRAVIS][BUG] Increase version of optim and dependency

* Change order of octave package installation

* Revert previous two commits – add bootstrapTest call at the start of the octave execution for the last stage

* Reorder octave package statistics before optim loading (starting with optim 1.5.3, it requires that statistics>=1.4.0 is loaded beforehand). Doing it now so that this doesn't bug up in the future (hopefully)

* Reorder io octave package installation order

* Reorder octaves io package installation order

.travis.yml

@@ -31,9 +31,9 @@ before_install:
 #- travis_retry wget -O /home/travis/octave/OctavePackages.zip https://osf.io/t465n/download
 #- unzip /home/travis/octave/OctavePackages.zip
 - travis_retry wget http://sourceforge.net/projects/octave/files/Octave%20Forge%20Packages/Individual%20Package%20Releases/struct-1.0.14.tar.gz -P /home/travis/octave
+- travis_retry wget http://sourceforge.net/projects/octave/files/Octave%20Forge%20Packages/Individual%20Package%20Releases/statistics-1.3.0.tar.gz -P /home/travis/octave
 - travis_retry wget http://sourceforge.net/projects/octave/files/Octave%20Forge%20Packages/Individual%20Package%20Releases/optim-1.5.2.tar.gz -P /home/travis/octave
 - travis_retry wget https://sourceforge.net/projects/octave/files/Octave%20Forge%20Packages/Individual%20Package%20Releases/io-2.4.10.tar.gz -P /home/travis/octave
-- travis_retry wget http://sourceforge.net/projects/octave/files/Octave%20Forge%20Packages/Individual%20Package%20Releases/statistics-1.3.0.tar.gz -P /home/travis/octave
 - travis_retry wget http://sourceforge.net/projects/octave/files/Octave%20Forge%20Packages/Individual%20Package%20Releases/image-2.6.1.tar.gz -P /home/travis/octave
 # --------------
 - make -C External/MOcov install
@@ -71,4 +71,4 @@ jobs:
   - stage: Test (no coverage)
     script: travis_wait 30 octave --no-gui --eval "bootstrapTest;cd('/home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible');res=moxunit_runtests('SimTest_qmt_bssfp.m');exit(~res);"
   - stage: Send combined coveralls.io report
-    script: aws s3 cp s3://qmrlab/$TRAVIS_BUILD_NUMBER/ /home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible/ --recursive --include "*.json";octave --no-gui --eval "cd('/home/travis/build/neuropoly/qMRLab/');startup;mocov_combine('/home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible/','coverage_combined.json')";aws s3 cp /home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible/coverage_combined.json s3://qmrlab/$TRAVIS_BUILD_NUMBER/coverage_combined.json;curl --verbose -F json_file=@/home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible/coverage_combined.json https://coveralls.io/api/v1/jobs
+    script: aws s3 cp s3://qmrlab/$TRAVIS_BUILD_NUMBER/ /home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible/ --recursive --include "*.json";octave --no-gui --eval "bootstrapTest;cd('/home/travis/build/neuropoly/qMRLab/');startup;mocov_combine('/home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible/','coverage_combined.json')";aws s3 cp /home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible/coverage_combined.json s3://qmrlab/$TRAVIS_BUILD_NUMBER/coverage_combined.json;curl --verbose -F json_file=@/home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible/coverage_combined.json https://coveralls.io/api/v1/jobs

bootstrapTest.m

@@ -14,8 +14,8 @@
 if moxunit_util_platform_is_octave
     if ~cacheState
         more off;
-        installist = {'struct-1.0.14.tar.gz','optim-1.5.2.tar.gz','io-2.4.10.tar.gz','statistics-1.3.0.tar.gz','image-2.6.1.tar.gz'};
-        loadlist = {'struct','optim','io','statistics','image'};
+        installist = {'struct-1.0.14.tar.gz','io-2.4.10.tar.gz','statistics-1.3.0.tar.gz','optim-1.5.2.tar.gz','image-2.6.1.tar.gz'};
+        loadlist = {'struct','io','statistics','optim','image'};
         cd('/home/travis/octave');
         for ii=1:length(installist)
             pkg prefix '/home/travis/octave'
@@ -93,4 +93,4 @@
         cd(cur)
         error('Cannot compile External/Faddeeva_MATLAB, a function used by NODDI. Plz install a compiler and run Faddeeva_build. Alternatively, edit NODDI_erfi.')
     end
-end
+end

startup.m

@@ -13,7 +13,7 @@
 
 else % OCTAVE
     % install octave package
-    installlist = {'struct','optim','io','statistics','image'};
+    installlist = {'struct','io','statistics','optim','image'};
     for ii=1:length(installlist)
         try
             disp(['loading ' installlist{ii}])
@@ -55,4 +55,4 @@
             warning('NODDI IS SLOW: Cannot compile External/Faddeeva_MATLAB.m, a fast function used by NODDI (in NODDI_erfi.m). Plz install a compiler (https://fr.mathworks.com/support/compilers.html) and run startup.m again.')
         end
     end
-end
+end