@qiime

Quantitative Insights Into Microbial Ecology

qiime-deploy-conf

configuration files to be used with the qiime-deploy packages

Updated Jul 17, 2016

Python 1 4

QIIME-Scaling

The goal of this project is to produce an estimator for runtime and memory consumption: (runtime, memory) = f(script_name, number_of_observations, number_of_samples, sparsity). This estimator will be based off of empirical results from standard test data sets (to be created, described below) and validated with real world datasets. Once in place,…

Updated Jun 18, 2016

its-reference-otus

A reference set of ITS OTUs derived from UNITE for use with QIIME

Updated Jun 15, 2016

Shell 0 3

qiime-ci

Support files for the QIIME continuous integration system.

Updated May 2, 2016

Python 25 25

qiime-deploy

Tool to easily install QIIME's dependencies on Linux systems

Updated Oct 14, 2015

Topiary-Explorer

Interactive phylogenetic tree viewing software

Updated Jul 16, 2015

Python 6 4

qiime-galaxy

Repository for QIIME/Galaxy integration code.

Updated Mar 26, 2015

JavaScript 8 12

qiime_web_app

QIIME, EMP and American Gut Web Application

Updated Sep 15, 2014

qiime.io

Experimental support for loading and interacting with QIIME files in R.

Updated Oct 16, 2013

Python 3 3

clout

A tool for the automated testing of software using cloud-based services.

Updated Jul 25, 2013

Python 3 2

nested_reference_otus

Updated May 7, 2013

JavaScript 5 19

qiime_test_data

Test input and output for QIIME scripts.

Updated Apr 3, 2013

Python 1 0

qp-refactor

Temporary repo for refactoring of parallel QIIME. This code was all merged into the main QIIME svn repository on 16 July 2012 (revision 3130). This repository is now closed for commit access - all future updates should happen in the main QIIME repository.

Updated Jul 16, 2012