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Quantitative Insights Into Microbial Ecology

Quantitative Insights Into Microbial Ecology

JavaScript 6 10

qiime_web_app

QIIME, EMP and American Gut Web Application

Updated April 17, 2014

qiime-deploy-conf

configuration files to be used with the qiime-deploy packages

Updated

Python 1 2

QIIME-Scaling

The goal of this project is to produce an estimator for runtime and memory consumption: (runtime, memory) = f(script_name, number_of_observations, number_of_samples, sparsity). This estimator will be based off of empirical results from standard test data sets (to be created, described below) and validated with real world datasets. Once in place, we can then use this estimator to a) improve resource utilization on both growler and compy b) determine what scripts to target for optimization.

Updated

Shell 0 2

qiime-ci

Support files for the QIIME continuous integration system.

Updated

JavaScript 0 9

qiime.github.com

Webspace for QIIME

Updated

Python 12 17

qiime-deploy

Tool to easily install QIIME on Linux systems

Updated

Java 6 2

Topiary-Explorer

Interactive phylogenetic tree viewing software

Updated

Python 2 4

qiime-galaxy

Repository for QIIME/Galaxy integration code.

Updated

qiime.io

Experimental support for loading and interacting with QIIME files in R.

Updated

Python 0 2

FastUnifrac

Repository for the FastUnifrac site code.

Updated

Python 2 3

clout

A tool for the automated testing of software using cloud-based services.

Updated

Python 2 1

nested_reference_otus

Updated

JavaScript 7 18

qiime_test_data

Test input and output for QIIME scripts.

Updated

its-reference-otus

A reference set of ITS OTUs derived from UNITE for use with QIIME

Updated

Python 1 0

qp-refactor

Temporary repo for refactoring of parallel QIIME. This code was all merged into the main QIIME svn repository on 16 July 2012 (revision 3130). This repository is now closed for commit access - all future updates should happen in the main QIIME repository.

Updated

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