Repository for test the QIIME scalability and performance analysis code.
To install (an active conda virtual environment recommended):
chmod +x scripts/scaling
pip install -e .To run:
sh scripts/scaling
This repository has been archived by the owner on Sep 23, 2023. It is now read-only.
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The goal of this project is to produce an estimator for runtime and memory consumption: (runtime, memory) = f(script_name, number_of_observations, number_of_samples, sparsity). This estimator will be based off of empirical results from standard test data sets (to be created, described below) and validated with real world datasets. Once in place,…
qiime/QIIME-Scaling
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The goal of this project is to produce an estimator for runtime and memory consumption: (runtime, memory) = f(script_name, number_of_observations, number_of_samples, sparsity). This estimator will be based off of empirical results from standard test data sets (to be created, described below) and validated with real world datasets. Once in place,…
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