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ENH: generate demux and deblur stats viz in Moving Pics tutorial (#217)
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Fixes #215
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RNAer authored and jairideout committed Oct 24, 2017
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13 changes: 12 additions & 1 deletion source/tutorials/moving-pictures.rst
Expand Up @@ -156,10 +156,21 @@ Next, the Deblur workflow is applied using the ``qiime deblur denoise-16S`` meth
--p-trim-length 120 \
--o-representative-sequences rep-seqs-deblur.qza \
--o-table table-deblur.qza \
--p-sample-stats \
--o-stats deblur-stats.qza

.. note:: The two commands used in this section generate QIIME 2 artifacts containing summary statistics. To view those summary statistics, you can visualize them using ``qiime quality-filter visualize-stats`` and ``qiime deblur visualize-stats``, respectively.
.. note:: The two commands used in this section generate QIIME 2 artifacts containing summary statistics. To view those summary statistics, you can visualize them using ``qiime quality-filter visualize-stats`` and ``qiime deblur visualize-stats``, respectively:

.. command-block::

qiime quality-filter visualize-stats \
--i-filter-stats demux-filter-stats.qza \
--o-visualization demux-filter-stats.qzv
qiime deblur visualize-stats \
--i-deblur-stats deblur-stats.qza \
--o-visualization deblur-stats.qzv


If you'd like to continue the tutorial using this FeatureTable (opposed to the DADA2 feature table generated in *Option 1*), run the following commands.

.. command-block::
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