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Fix scipy sqrtm precision issue #864

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merged 5 commits into from
Jan 16, 2024
Merged

Fix scipy sqrtm precision issue #864

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dc1e1d6
Use eigendecomposition inplace of la.sqrtm.
fdmalone Jan 16, 2024
139264f
Update envs.
fdmalone Jan 16, 2024
6e68302
Upper limit on cirq due to gate equality failure.
fdmalone Jan 16, 2024
99f4e34
Update dependencies.
fdmalone Jan 16, 2024
0c86757
Fix comment typo about sqrt.
fdmalone Jan 16, 2024
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5 changes: 2 additions & 3 deletions dev_tools/requirements/deps/runtime.txt
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Original file line number Diff line number Diff line change
@@ -1,12 +1,11 @@
cirq-core~=1.0
cirq-core~=1.0,<1.3.0
deprecation
h5py>=2.8
networkx
numpy>=1.11.0
pubchempy
requests>=2.18

# https://github.com/scipy/scipy/issues/18250
scipy>=1.1.0,<1.10.0
scipy>=1.1.0

sympy
68 changes: 34 additions & 34 deletions dev_tools/requirements/envs/dev.env.txt
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Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,15 +8,15 @@ ase==3.22.1
# via -r deps/resource_estimates_runtime.txt
astroid==2.13.5
# via pylint
attrs==23.1.0
attrs==23.2.0
# via
# jsonschema
# referencing
black==23.3.0
# via -r deps/format.txt
build==1.0.3
# via pip-tools
certifi==2023.7.22
certifi==2023.11.17
# via requests
charset-normalizer==3.3.2
# via requests
Expand All @@ -28,7 +28,7 @@ click==8.1.7
# pip-tools
contourpy==1.2.0
# via matplotlib
coverage[toml]==7.3.2
coverage[toml]==7.4.0
# via pytest-cov
cycler==0.12.1
# via matplotlib
Expand All @@ -38,45 +38,45 @@ dill==0.3.7
# via pylint
duet==0.2.9
# via cirq-core
exceptiongroup==1.1.3
exceptiongroup==1.2.0
# via pytest
execnet==2.0.2
# via pytest-xdist
fastjsonschema==2.18.1
fastjsonschema==2.19.1
# via nbformat
fonttools==4.43.0
fonttools==4.47.2
# via matplotlib
h5py==3.10.0
# via
# -r deps/runtime.txt
# pyscf
idna==3.4
idna==3.6
# via requests
iniconfig==2.0.0
# via pytest
isort==5.12.0
isort==5.13.2
# via pylint
jax==0.4.20
jax==0.4.23
# via -r deps/resource_estimates_runtime.txt
jaxlib==0.4.20
jaxlib==0.4.23
# via -r deps/resource_estimates_runtime.txt
jsonschema==4.19.2
jsonschema==4.21.0
# via nbformat
jsonschema-specifications==2023.7.1
jsonschema-specifications==2023.12.1
# via jsonschema
jupyter-core==5.5.0
jupyter-core==5.7.1
# via nbformat
kiwisolver==1.4.5
# via matplotlib
lazy-object-proxy==1.9.0
lazy-object-proxy==1.10.0
# via astroid
matplotlib==3.8.1
matplotlib==3.8.2
# via
# ase
# cirq-core
mccabe==0.7.0
# via pylint
ml-dtypes==0.3.1
ml-dtypes==0.3.2
# via
# jax
# jaxlib
Expand All @@ -94,7 +94,7 @@ networkx==3.2.1
# via
# -r deps/runtime.txt
# cirq-core
numpy==1.25.2
numpy==1.26.3
# via
# -r deps/runtime.txt
# ase
Expand All @@ -118,15 +118,15 @@ packaging==23.2
# deprecation
# matplotlib
# pytest
pandas==2.1.2
pandas==2.1.4
# via cirq-core
pathspec==0.11.2
pathspec==0.12.1
# via black
pillow==10.1.0
pillow==10.2.0
# via matplotlib
pip-tools==7.3.0
# via -r deps/pip-tools.txt
platformdirs==3.11.0
platformdirs==4.1.0
# via
# black
# jupyter-core
Expand All @@ -143,35 +143,35 @@ pyproject-hooks==1.0.0
# via build
pyscf==2.4.0
# via -r deps/resource_estimates_runtime.txt
pytest==7.4.3
pytest==7.4.4
# via
# -r deps/pytest.txt
# pytest-asyncio
# pytest-cov
# pytest-xdist
pytest-asyncio==0.21.1
pytest-asyncio==0.23.3
# via -r deps/pytest.txt
pytest-cov==4.1.0
# via -r deps/pytest.txt
pytest-xdist==3.3.1
pytest-xdist==3.5.0
# via -r deps/pytest.txt
python-dateutil==2.8.2
# via
# matplotlib
# pandas
pytz==2023.3.post1
# via pandas
referencing==0.30.2
referencing==0.32.1
# via
# jsonschema
# jsonschema-specifications
requests==2.31.0
# via -r deps/runtime.txt
rpds-py==0.10.6
rpds-py==0.17.1
# via
# jsonschema
# referencing
scipy==1.9.3
scipy==1.11.4
# via
# -r deps/runtime.txt
# ase
Expand All @@ -196,28 +196,28 @@ tomli==2.0.1
# pylint
# pyproject-hooks
# pytest
tomlkit==0.12.2
tomlkit==0.12.3
# via pylint
tqdm==4.66.1
# via cirq-core
traitlets==5.13.0
traitlets==5.14.1
# via
# jupyter-core
# nbformat
typed-ast==1.4.3
# via mypy
typing-extensions==4.8.0
typing-extensions==4.9.0
# via
# astroid
# cirq-core
# mypy
tzdata==2023.3
tzdata==2023.4
# via pandas
urllib3==2.0.7
urllib3==2.1.0
# via requests
wheel==0.41.3
wheel==0.42.0
# via pip-tools
wrapt==1.15.0
wrapt==1.16.0
# via astroid

# The following packages are considered to be unsafe in a requirements file:
Expand Down
26 changes: 13 additions & 13 deletions dev_tools/requirements/envs/format.env.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@ black==23.3.0
# via
# -c envs/dev.env.txt
# -r deps/format.txt
certifi==2023.7.22
certifi==2023.11.17
# via
# -c envs/dev.env.txt
# requests
Expand Down Expand Up @@ -40,23 +40,23 @@ duet==0.2.9
# via
# -c envs/dev.env.txt
# cirq-core
fonttools==4.43.0
fonttools==4.47.2
# via
# -c envs/dev.env.txt
# matplotlib
h5py==3.10.0
# via
# -c envs/dev.env.txt
# -r deps/runtime.txt
idna==3.4
idna==3.6
# via
# -c envs/dev.env.txt
# requests
kiwisolver==1.4.5
# via
# -c envs/dev.env.txt
# matplotlib
matplotlib==3.8.1
matplotlib==3.8.2
# via
# -c envs/dev.env.txt
# cirq-core
Expand All @@ -73,7 +73,7 @@ networkx==3.2.1
# -c envs/dev.env.txt
# -r deps/runtime.txt
# cirq-core
numpy==1.25.2
numpy==1.26.3
# via
# -c envs/dev.env.txt
# -r deps/runtime.txt
Expand All @@ -89,19 +89,19 @@ packaging==23.2
# black
# deprecation
# matplotlib
pandas==2.1.2
pandas==2.1.4
# via
# -c envs/dev.env.txt
# cirq-core
pathspec==0.11.2
pathspec==0.12.1
# via
# -c envs/dev.env.txt
# black
pillow==10.1.0
pillow==10.2.0
# via
# -c envs/dev.env.txt
# matplotlib
platformdirs==3.11.0
platformdirs==4.1.0
# via
# -c envs/dev.env.txt
# black
Expand All @@ -126,7 +126,7 @@ requests==2.31.0
# via
# -c envs/dev.env.txt
# -r deps/runtime.txt
scipy==1.9.3
scipy==1.11.4
# via
# -c envs/dev.env.txt
# -r deps/runtime.txt
Expand All @@ -152,15 +152,15 @@ tqdm==4.66.1
# via
# -c envs/dev.env.txt
# cirq-core
typing-extensions==4.8.0
typing-extensions==4.9.0
# via
# -c envs/dev.env.txt
# cirq-core
tzdata==2023.3
tzdata==2023.4
# via
# -c envs/dev.env.txt
# pandas
urllib3==2.0.7
urllib3==2.1.0
# via
# -c envs/dev.env.txt
# requests
22 changes: 11 additions & 11 deletions dev_tools/requirements/envs/mypy.env.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
#
# pip-compile --constraint=envs/dev.env.txt --output-file=envs/mypy.env.txt deps/mypy.txt deps/runtime.txt
#
certifi==2023.7.22
certifi==2023.11.17
# via
# -c envs/dev.env.txt
# requests
Expand Down Expand Up @@ -32,23 +32,23 @@ duet==0.2.9
# via
# -c envs/dev.env.txt
# cirq-core
fonttools==4.43.0
fonttools==4.47.2
# via
# -c envs/dev.env.txt
# matplotlib
h5py==3.10.0
# via
# -c envs/dev.env.txt
# -r deps/runtime.txt
idna==3.4
idna==3.6
# via
# -c envs/dev.env.txt
# requests
kiwisolver==1.4.5
# via
# -c envs/dev.env.txt
# matplotlib
matplotlib==3.8.1
matplotlib==3.8.2
# via
# -c envs/dev.env.txt
# cirq-core
Expand All @@ -69,7 +69,7 @@ networkx==3.2.1
# -c envs/dev.env.txt
# -r deps/runtime.txt
# cirq-core
numpy==1.25.2
numpy==1.26.3
# via
# -c envs/dev.env.txt
# -r deps/runtime.txt
Expand All @@ -84,11 +84,11 @@ packaging==23.2
# -c envs/dev.env.txt
# deprecation
# matplotlib
pandas==2.1.2
pandas==2.1.4
# via
# -c envs/dev.env.txt
# cirq-core
pillow==10.1.0
pillow==10.2.0
# via
# -c envs/dev.env.txt
# matplotlib
Expand All @@ -113,7 +113,7 @@ requests==2.31.0
# via
# -c envs/dev.env.txt
# -r deps/runtime.txt
scipy==1.9.3
scipy==1.11.4
# via
# -c envs/dev.env.txt
# -r deps/runtime.txt
Expand All @@ -139,16 +139,16 @@ typed-ast==1.4.3
# via
# -c envs/dev.env.txt
# mypy
typing-extensions==4.8.0
typing-extensions==4.9.0
# via
# -c envs/dev.env.txt
# cirq-core
# mypy
tzdata==2023.3
tzdata==2023.4
# via
# -c envs/dev.env.txt
# pandas
urllib3==2.0.7
urllib3==2.1.0
# via
# -c envs/dev.env.txt
# requests