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Hi, thank you for creating this alternative to the R package!
I'm having trouble finding how to disable the histogram or redirecting the output into a png/pdf during the qc step, as it's causing a Timeout error.
Appreciate your help!
The text was updated successfully, but these errors were encountered:
Hello B195515,
Thanks for using this package. Could you update this package to 0.1.3 and add {"plot": False} to the qc_kws in scTenifoldNet?
For example, sc = scTenifoldNet(df_1, df_2, "X", "Y", qc_kws={"min_lib_size": 1, "plot": False}, nc_kws={"n_cpus": 1})
I managed to figure out that the issue was with Ray not being able to use multiple cores (nc step) in my institute's compute cluster for some unknown reason.
It works now on a different compute node, and I used the step-by-step run. Works great!
Hi, thank you for creating this alternative to the R package!
I'm having trouble finding how to disable the histogram or redirecting the output into a png/pdf during the qc step, as it's causing a Timeout error.
Appreciate your help!
The text was updated successfully, but these errors were encountered: