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Numpy warning during csv export #42

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atheyers opened this issue Jul 31, 2019 · 2 comments
Open

Numpy warning during csv export #42

atheyers opened this issue Jul 31, 2019 · 2 comments

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@atheyers
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atheyers commented Jul 31, 2019

/global/home/hpc4089/.local/lib/python3.5/site-packages/numpy/core/_methods.py:140: RuntimeWarning: Degrees of freedom <= 0 for slice
  keepdims=keepdims)
/global/home/hpc4089/.local/lib/python3.5/site-packages/numpy/core/_methods.py:132: RuntimeWarning: invalid value encountered in double_scalars
  ret = ret.dtype.type(ret / rcount)
@atheyers
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atheyers commented Aug 2, 2019

This only happens when using -fs selectkbest_f_classif. If the default, variancethreshold is used, there is no error.

@raamana
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raamana commented Aug 2, 2019

Thanks - it seems something specific to particular type of data. What I need to know where this warning is raised from inside neuropredict. May need to reproduce it in debuggable way. If this is causing any issues, I will investigate it more

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