Repository provides a cookiecutter template for Snakemake driven analysis. The organization and use case is inspired by Snakemake's heavy use in Bioinformatics analysis, but feel free to adapt it for your personal use.
Install cookiecutter and initialize project (with desired details):
pip install cookiecutter
cookiecutter https://github.com/raivivek/snakemake-cookiecutter
$ make dry_run
localrule all:
jobid: 0
reason: Rules with neither input nor output files are always executed.
Job counts:
count jobs
1 all
1
{{cookiecutter.project_slug}}
├── bin
├── config
│ ├── cluster.yaml
│ └── config.yaml
├── logs
├── Makefile
├── README.md
└── src
└── Snakefile
See LICENSE.