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googleVis + slidify encoding issue #377

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gd047 opened this Issue Jun 18, 2014 · 16 comments

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gd047 commented Jun 18, 2014

Could you please help me with the following issue?
http://gd047.github.io/project_cost_escalation/#6

As you will see, the greek characters appear correctly in Select Variables area of the motion chart, while they do not for the Color and y-axis indicators.

Here is my repo

sessionInfo()
R version 3.1.0 Patched (2014-05-24 r65737)
Platform: i386-w64-mingw32/i386 (32-bit)

locale:
[1] LC_COLLATE=Greek_Greece.1253  LC_CTYPE=Greek_Greece.1253    LC_MONETARY=Greek_Greece.1253 LC_NUMERIC=C                 
[5] LC_TIME=Greek_Greece.1253    

attached base packages:
 [1] datasets  grDevices splines   graphics  stats     grid      tcltk     utils     methods   base     

other attached packages:
 [1] XML_3.98-1.1           sendmailR_1.1-2        rJython_0.0-4          rjson_0.2.13           rJava_0.9-6           
 [6] base64enc_0.1-1        segmented_0.3-1.0      shiny_0.9.1            plyr_1.8.1             googleVis_0.5.2       
[11] knitr_1.6              slidifyLibraries_0.3.1 slidify_0.3.52         fBasics_3010.86        timeSeries_3010.97    
[16] timeDate_3010.98       MASS_7.3-33            RODBC_1.3-10           car_2.0-20             sos_1.3-8             
[21] brew_1.0-6             reshape2_1.4           scales_0.2.4           ggplot2_1.0.0          svSocket_0.9-57       
[26] TinnR_1.0-5            R2HTML_2.2.1           Hmisc_3.14-4           Formula_1.1-1          survival_2.37-7       
[31] lattice_0.20-29       

loaded via a namespace (and not attached):
 [1] bitops_1.0-6        caTools_1.17        cluster_1.15.2      codetools_0.2-8     colorspace_1.2-4    digest_0.6.4       
 [7] evaluate_0.5.5      formatR_0.10        gtable_0.1.2        httpuv_1.3.0        latticeExtra_0.6-26 markdown_0.7       
[13] munsell_0.4.2       nnet_7.3-8          proto_0.3-10        RColorBrewer_1.0-5  Rcpp_0.11.1         RJSONIO_1.2-0.2    
[19] stabledist_0.6-6    stringr_0.6.2       svMisc_0.9-70       tools_3.1.0         whisker_0.3-2       xtable_1.7-0       
[25] yaml_2.1.11       
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ramnathv Jun 18, 2014

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Please update to the latest versions of slidify and slidifyLibraries. Encoding issues were fixed recently, thanks to @kohske.

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ramnathv commented Jun 18, 2014

Please update to the latest versions of slidify and slidifyLibraries. Encoding issues were fixed recently, thanks to @kohske.

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gd047 Jun 19, 2014

I did the installation again (using ref = "dev"), deleted the libraries folder, run "runDeck" and pushed to github, but unfortunately the result remains the same.

gd047 commented Jun 19, 2014

I did the installation again (using ref = "dev"), deleted the libraries folder, run "runDeck" and pushed to github, but unfortunately the result remains the same.

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kohske Jun 19, 2014

@gd047 perhaps you need to install fix-encode branch.

#329 (comment)

kohske commented Jun 19, 2014

@gd047 perhaps you need to install fix-encode branch.

#329 (comment)

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gd047 Jun 19, 2014

After installing fix-encode, greek characters disappeared completely from the plot :-(

gd047 commented Jun 19, 2014

After installing fix-encode, greek characters disappeared completely from the plot :-(

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kohske Jun 19, 2014

Your repo is too big and requires some additional installation. If you will provide a minimum reproducible example, I'll test it.

kohske commented Jun 19, 2014

Your repo is too big and requires some additional installation. If you will provide a minimum reproducible example, I'll test it.

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gd047 Jun 19, 2014

On the fix-encode link the slidify command was given like this
slidify('index-UTF8.Rmd', encoding='UTF8')
Do I have to do the same with runDeck() ?
@kohske I will post a link to another test repo in a few hours. Thank you.

gd047 commented Jun 19, 2014

On the fix-encode link the slidify command was given like this
slidify('index-UTF8.Rmd', encoding='UTF8')
Do I have to do the same with runDeck() ?
@kohske I will post a link to another test repo in a few hours. Thank you.

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gd047 Jun 19, 2014

@kohske This is another test repo. I am also posting the output of sessionInfo() again, because I had to rollback markdown to version markdown_0.6.3, due to some encoding issues.

https://github.com/gd047/gvis_test
http://gd047.github.io/gvis_test/

EDIT:
The generated .md file is not properly UTF-8 encoded. I just got the following email from github:

The page build failed with the following error:
The file index.md is not properly UTF-8 encoded. For more information, see https://help.github.com/articles/page-build-failed-file-is-not-properly-utf8-encoded.

R version 3.1.0 Patched (2014-05-24 r65737)
Platform: i386-w64-mingw32/i386 (32-bit)

locale:
[1] LC_COLLATE=Greek_Greece.1253  LC_CTYPE=Greek_Greece.1253    LC_MONETARY=Greek_Greece.1253 LC_NUMERIC=C                 
[5] LC_TIME=Greek_Greece.1253    

attached base packages:
 [1] datasets  grDevices splines   graphics  stats     grid      tcltk     utils     methods   base     

other attached packages:
 [1] XML_3.98-1.1           slidifyLibraries_0.3.1 shiny_0.9.1            slidify_0.4.5          fBasics_3010.86       
 [6] timeSeries_3010.97     timeDate_3010.98       MASS_7.3-33            RODBC_1.3-10           car_2.0-20            
[11] sos_1.3-8              brew_1.0-6             reshape2_1.4           scales_0.2.4           ggplot2_1.0.0         
[16] svSocket_0.9-57        TinnR_1.0-5            R2HTML_2.2.1           Hmisc_3.14-4           Formula_1.1-1         
[21] survival_2.37-7        lattice_0.20-29       

loaded via a namespace (and not attached):
 [1] bitops_1.0-6        caTools_1.17        cluster_1.15.2      colorspace_1.2-4    digest_0.6.4        evaluate_0.5.5     
 [7] formatR_0.10        gtable_0.1.2        httpuv_1.3.0        knitr_1.6           latticeExtra_0.6-26 markdown_0.6.3     
[13] munsell_0.4.2       nnet_7.3-8          plyr_1.8.1          proto_0.3-10        RColorBrewer_1.0-5  Rcpp_0.11.1        
[19] RJSONIO_1.2-0.2     stabledist_0.6-6    stringr_0.6.2       svMisc_0.9-70       tools_3.1.0         whisker_0.3-2      
[25] xtable_1.7-0        yaml_2.1.11  

gd047 commented Jun 19, 2014

@kohske This is another test repo. I am also posting the output of sessionInfo() again, because I had to rollback markdown to version markdown_0.6.3, due to some encoding issues.

https://github.com/gd047/gvis_test
http://gd047.github.io/gvis_test/

EDIT:
The generated .md file is not properly UTF-8 encoded. I just got the following email from github:

The page build failed with the following error:
The file index.md is not properly UTF-8 encoded. For more information, see https://help.github.com/articles/page-build-failed-file-is-not-properly-utf8-encoded.

R version 3.1.0 Patched (2014-05-24 r65737)
Platform: i386-w64-mingw32/i386 (32-bit)

locale:
[1] LC_COLLATE=Greek_Greece.1253  LC_CTYPE=Greek_Greece.1253    LC_MONETARY=Greek_Greece.1253 LC_NUMERIC=C                 
[5] LC_TIME=Greek_Greece.1253    

attached base packages:
 [1] datasets  grDevices splines   graphics  stats     grid      tcltk     utils     methods   base     

other attached packages:
 [1] XML_3.98-1.1           slidifyLibraries_0.3.1 shiny_0.9.1            slidify_0.4.5          fBasics_3010.86       
 [6] timeSeries_3010.97     timeDate_3010.98       MASS_7.3-33            RODBC_1.3-10           car_2.0-20            
[11] sos_1.3-8              brew_1.0-6             reshape2_1.4           scales_0.2.4           ggplot2_1.0.0         
[16] svSocket_0.9-57        TinnR_1.0-5            R2HTML_2.2.1           Hmisc_3.14-4           Formula_1.1-1         
[21] survival_2.37-7        lattice_0.20-29       

loaded via a namespace (and not attached):
 [1] bitops_1.0-6        caTools_1.17        cluster_1.15.2      colorspace_1.2-4    digest_0.6.4        evaluate_0.5.5     
 [7] formatR_0.10        gtable_0.1.2        httpuv_1.3.0        knitr_1.6           latticeExtra_0.6-26 markdown_0.6.3     
[13] munsell_0.4.2       nnet_7.3-8          plyr_1.8.1          proto_0.3-10        RColorBrewer_1.0-5  Rcpp_0.11.1        
[19] RJSONIO_1.2-0.2     stabledist_0.6-6    stringr_0.6.2       svMisc_0.9-70       tools_3.1.0         whisker_0.3-2      
[25] xtable_1.7-0        yaml_2.1.11  
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kohske Jun 19, 2014

@gd047 This works on OS X and I'll test it on Windows tomorrow.

kohske commented Jun 19, 2014

@gd047 This works on OS X and I'll test it on Windows tomorrow.

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arturochian Jun 19, 2014

@kohske I have similar problem with spanish character.
I think the problem is in the html file because I have the 2 versions of html and the same libraries and one is working well and the another, not.
I'm using the new version of RStudio and this is my session info

R version 3.1.0 (2014-04-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=Spanish_Peru.1252
[2] LC_CTYPE=Spanish_Peru.1252
[3] LC_MONETARY=Spanish_Peru.1252
[4] LC_NUMERIC=C
[5] LC_TIME=Spanish_Peru.1252

attached base packages:
[1] stats graphics grDevices utils datasets
[6] methods base

other attached packages:
[1] reports_0.1.2 slidifyLibraries_0.3.1
[3] slidify_0.4.5 devtools_1.5
[5] rCharts_0.4.2 rmarkdown_0.2.46
[7] knitcitations_0.5-0 bibtex_0.3-6
[9] markdownapp_0.1 markdown_0.6.5
[11] knitr_1.6

loaded via a namespace (and not attached):
[1] codetools_0.2-8 digest_0.6.4 evaluate_0.5.3
[4] formatR_0.10 grid_3.1.0 htmltools_0.2.4
[7] httr_0.3 lattice_0.20-29 memoise_0.1
[10] parallel_3.1.0 plyr_1.8.1 Rcpp_0.11.1
[13] RCurl_1.95-4.1 RJSONIO_1.0-3 stringr_0.6.2
[16] tools_3.1.0 whisker_0.3-2 XML_3.98-1.1
[19] xtable_1.7-3 yaml_2.1.11

arturochian commented Jun 19, 2014

@kohske I have similar problem with spanish character.
I think the problem is in the html file because I have the 2 versions of html and the same libraries and one is working well and the another, not.
I'm using the new version of RStudio and this is my session info

R version 3.1.0 (2014-04-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=Spanish_Peru.1252
[2] LC_CTYPE=Spanish_Peru.1252
[3] LC_MONETARY=Spanish_Peru.1252
[4] LC_NUMERIC=C
[5] LC_TIME=Spanish_Peru.1252

attached base packages:
[1] stats graphics grDevices utils datasets
[6] methods base

other attached packages:
[1] reports_0.1.2 slidifyLibraries_0.3.1
[3] slidify_0.4.5 devtools_1.5
[5] rCharts_0.4.2 rmarkdown_0.2.46
[7] knitcitations_0.5-0 bibtex_0.3-6
[9] markdownapp_0.1 markdown_0.6.5
[11] knitr_1.6

loaded via a namespace (and not attached):
[1] codetools_0.2-8 digest_0.6.4 evaluate_0.5.3
[4] formatR_0.10 grid_3.1.0 htmltools_0.2.4
[7] httr_0.3 lattice_0.20-29 memoise_0.1
[10] parallel_3.1.0 plyr_1.8.1 Rcpp_0.11.1
[13] RCurl_1.95-4.1 RJSONIO_1.0-3 stringr_0.6.2
[16] tools_3.1.0 whisker_0.3-2 XML_3.98-1.1
[19] xtable_1.7-3 yaml_2.1.11

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arturochian Jun 19, 2014

PD: in my case I'm not using googleVis.

This is the bad html http://prntscr.com/3ueitp
This is the good html http://prntscr.com/3uej5z

I create a repo for testing for spanish character. I think the problem is just in index.html for that reason I create a repo.with these 2 html.
https://github.com/arturochian/slidifyexamples1
I'm going to create a reproducible example in one hour. I'm using encoding="WINDOWS-1252" because it works for me (spanish) when I worked slidify manually (I had to change the header.html in the "partial" folder).

Is there a way for view easily the difference between these html?

Thank in advance

arturochian commented Jun 19, 2014

PD: in my case I'm not using googleVis.

This is the bad html http://prntscr.com/3ueitp
This is the good html http://prntscr.com/3uej5z

I create a repo for testing for spanish character. I think the problem is just in index.html for that reason I create a repo.with these 2 html.
https://github.com/arturochian/slidifyexamples1
I'm going to create a reproducible example in one hour. I'm using encoding="WINDOWS-1252" because it works for me (spanish) when I worked slidify manually (I had to change the header.html in the "partial" folder).

Is there a way for view easily the difference between these html?

Thank in advance

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kohske Jun 20, 2014

@gd047 I successfully created web slide from your .Rmd on Win 7.

http://rpubs.com/kohske/20225

> sessionInfo()
R version 3.1.0 (2014-04-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=Greek_Greece.1253  LC_CTYPE=Greek_Greece.1253    LC_MONETARY=Greek_Greece.1253 LC_NUMERIC=C                 
[5] LC_TIME=Greek_Greece.1253    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] RCurl_1.95-4.1         bitops_1.0-6           slidifyLibraries_0.3.1 plyr_1.8.1             knitr_1.6             
[6] googleVis_0.5.2        slidify_0.4.5         

loaded via a namespace (and not attached):
 [1] codetools_0.2-8  digest_0.6.4     evaluate_0.5.5   formatR_0.10     htmltools_0.2.4  markdown_0.7     Rcpp_0.11.2     
 [8] RJSONIO_1.2-0.2  rmarkdown_0.2.46 stringr_0.6.2    tools_3.1.0      whisker_0.3-2    yaml_2.1.13     

kohske commented Jun 20, 2014

@gd047 I successfully created web slide from your .Rmd on Win 7.

http://rpubs.com/kohske/20225

> sessionInfo()
R version 3.1.0 (2014-04-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=Greek_Greece.1253  LC_CTYPE=Greek_Greece.1253    LC_MONETARY=Greek_Greece.1253 LC_NUMERIC=C                 
[5] LC_TIME=Greek_Greece.1253    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] RCurl_1.95-4.1         bitops_1.0-6           slidifyLibraries_0.3.1 plyr_1.8.1             knitr_1.6             
[6] googleVis_0.5.2        slidify_0.4.5         

loaded via a namespace (and not attached):
 [1] codetools_0.2-8  digest_0.6.4     evaluate_0.5.5   formatR_0.10     htmltools_0.2.4  markdown_0.7     Rcpp_0.11.2     
 [8] RJSONIO_1.2-0.2  rmarkdown_0.2.46 stringr_0.6.2    tools_3.1.0      whisker_0.3-2    yaml_2.1.13     
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gd047 Jun 20, 2014

@kohske Could you please tell me the command you used to puplish in rpubs, because what I have tried was not successful.

gd047 commented Jun 20, 2014

@kohske Could you please tell me the command you used to puplish in rpubs, because what I have tried was not successful.

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kohske Jun 20, 2014

Just

slidify("index.Rmd", encoding = "UTF8")

kohske commented Jun 20, 2014

Just

slidify("index.Rmd", encoding = "UTF8")
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gd047 Jun 20, 2014

Thanks, I did it on github http://gd047.github.io/gvis_test/#3
I was asking for the rpubs publishing command. Could you help me?

gd047 commented Jun 20, 2014

Thanks, I did it on github http://gd047.github.io/gvis_test/#3
I was asking for the rpubs publishing command. Could you help me?

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kohske Jun 20, 2014

There is publish_rpub() in slidify, but I failed upload from Win7, so I did upload from OS X.

kohske commented Jun 20, 2014

There is publish_rpub() in slidify, but I failed upload from Win7, so I did upload from OS X.

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gd047 Jun 20, 2014

Thank you. This question remains open.

It's minor but, is there a way to set encoding = "UTF8" when using the runDeck() command to view the presentation locally? I still have problem with that.

Hopefully I will remember to install the fix-encode branch, after slidify in the future. :-/

gd047 commented Jun 20, 2014

Thank you. This question remains open.

It's minor but, is there a way to set encoding = "UTF8" when using the runDeck() command to view the presentation locally? I still have problem with that.

Hopefully I will remember to install the fix-encode branch, after slidify in the future. :-/

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