moc and seaice issue #70

Hae-CheolKim-NOAA · 2021-03-22T20:20:31Z

I tired to make testing and bumped into some complaints like this.

The error from moc is as follows:

(xesmf_env) hck@hck-XPS-8900 ~/KIM/MOM6-examples/tools/om4labs/testing $ make
om4labs sst_annual_bias_1x1deg --style diff --platform testing
test_data/output/ocean_annual_z_d2_1x1deg.0001-0010.ann.nc
om4labs sst_annual_bias_1x1deg --style compare --platform testing
test_data/output/ocean_annual_z_d2_1x1deg.0001-0010.ann.nc
om4labs sss_annual_bias_1x1deg --style diff --platform testing
test_data/output/ocean_annual_z_d2_1x1deg.0001-0010.ann.nc
om4labs sss_annual_bias_1x1deg --style compare --platform testing
test_data/output/ocean_annual_z_d2_1x1deg.0001-0010.ann.nc
om4labs moc --config OM4p125 --platform testing
test_data/output/ocean_month_z_d2_refined.0036-0040.ann.nc
Traceback (most recent call last):
File "/home/hck/miniconda3/envs/xesmf_env/bin/om4labs", line 4, in
import('pkg_resources').run_script('om4labs==0.0.1', 'om4labs')
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/pkg_resources/init.py", line 650, in run_script
self.require(requires)[0].run_script(script_name, ns)
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/pkg_resources/init.py", line 1446, in run_script
exec(code, namespace, namespace)
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/om4labs-0.0.1-py3.7.egg/EGG-INFO/scripts/om4labs", line 33, in
CLI()
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/om4labs-0.0.1-py3.7.egg/EGG-INFO/scripts/om4labs", line 29, in init
om4labs.diags.dict[args.command].parse_and_run(subargs)
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/om4labs-0.0.1-py3.7.egg/om4labs/diags/moc/moc.py", line 399, in parse_and_run
imgbuf = run(args)
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/om4labs-0.0.1-py3.7.egg/om4labs/diags/moc/moc.py", line 370, in run
) = read(dictArgs, varname=varname)
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/om4labs-0.0.1-py3.7.egg/om4labs/diags/moc/moc.py", line 146, in read
depth = read_topography(dictArgs, coords=ds.coords, point_type="v")
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/om4labs-0.0.1-py3.7.egg/om4labs/om4common.py", line 558, in read_topography
xedge = "outer" if (len(coords.xq) == len(coords.xh) + 1) else "right"
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/xarray/core/common.py", line 229, in getattr
"{!r} object has no attribute {!r}".format(type(self).name, name)
AttributeError: 'Dataset' object has no attribute 'xq'
Makefile:19: 'moc.png' 타겟에 대한 명령이 실패했습니다
make: *** [moc.png] 오류 1

The seaice complaint is as follows:

(xesmf_env) hck@hck-XPS-8900 ~/KIM/MOM6-examples/tools/om4labs/testing $ make
om4labs seaice --platform testing --config OM4p125
--obsfile test_data/obs/OBS_NSIDC_sat_NH_T2Ms_sic.nc
test_data/output/ice_1x1deg.003601-004012.siconc_old.nc
Create weight file: bilinear_448x304_180x360.nc
Traceback (most recent call last):
File "/home/hck/miniconda3/envs/xesmf_env/bin/om4labs", line 4, in
import('pkg_resources').run_script('om4labs==0.0.1', 'om4labs')
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/pkg_resources/init.py", line 650, in run_script
self.require(requires)[0].run_script(script_name, ns)
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/pkg_resources/init.py", line 1446, in run_script
exec(code, namespace, namespace)
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/om4labs-0.0.1-py3.7.egg/EGG-INFO/scripts/om4labs", line 33, in
CLI()
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/om4labs-0.0.1-py3.7.egg/EGG-INFO/scripts/om4labs", line 29, in init
om4labs.diags.dict[args.command].parse_and_run(subargs)
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/om4labs-0.0.1-py3.7.egg/om4labs/diags/seaice/seaice.py", line 423, in parse_and_run
imgbuf = run(args)
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/om4labs-0.0.1-py3.7.egg/om4labs/diags/seaice/seaice.py", line 399, in run
model, obs = calculate(ds, dobs, region=dictArgs["region"])
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/om4labs-0.0.1-py3.7.egg/om4labs/diags/seaice/seaice.py", line 189, in calculate
obs["ac_r"] = regrid.curv_to_curv(obs["ac"], model["ac"], reuse_weights=False)
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/om4labs-0.0.1-py3.7.egg/om4labs/diags/seaice/regrid.py", line 18, in curv_to_curv
regridder = xe.Regridder(src, dst, "bilinear", reuse_weights=reuse_weights)
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/xesmf/frontend.py", line 235, in init
self._write_weight_file()
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/xesmf/frontend.py", line 279, in _write_weight_file
ignore_degenerate=self.ignore_degenerate)
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/xesmf/backend.py", line 280, in esmf_regrid_build
ignore_degenerate=ignore_degenerate)
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/ESMF/util/decorators.py", line 64, in new_func
return func(*args, **kwargs)
File "/home/hck/miniconda3/envs/xesmf_env/lib/python3.7/site-packages/ESMF/api/regrid.py", line 136, in init
raise ImportError(msg)
ImportError: Regrid(filename) requires PIO and does not work if ESMF has not been built with MPI support
Makefile:40: 'seaice.nh.png' 타겟에 대한 명령이 실패했습니다
make: *** [seaice.nh.png] 오류 1

My conda list is as follows:

(xesmf_env) hck@hck-XPS-8900 ~/KIM/MOM6-examples/tools/om4labs/testing $ conda list --explicit

This file may be used to create an environment using:

$ conda create --name --file

platform: linux-64

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moc and seaice issue #70

moc and seaice issue #70

Hae-CheolKim-NOAA commented Mar 22, 2021

moc and seaice issue #70

moc and seaice issue #70

Comments

Hae-CheolKim-NOAA commented Mar 22, 2021

This file may be used to create an environment using:

$ conda create --name --file

platform: linux-64