Some tools for the extraction and plot of second-level ROI-to-ROI results from CONN Toolbox
Branch: master
Clone or download
raphaelvallat
raphaelvallat changed README
Latest commit 7406e61 Feb 16, 2017
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
.gitattributes :neckbeard: Added .gitattributes & .gitignore files Feb 12, 2017
.gitignore :neckbeard: Added .gitattributes & .gitignore files Feb 12, 2017
README.md changed README Feb 16, 2017
conn_correl_mat.py added conn_correl_mat.py Feb 15, 2017
conn_plot_ts.m added conn_plot_ts.m Feb 16, 2017
extract_correl_mat.m added conn_correl_mat.py Feb 15, 2017
plot_correl_mat.m initial push Feb 12, 2017

README.md

conn_tools

Some tools born from practical needs during the analysis of ROI-to-ROI functional connectivity using the excellent CONN Toolbox.

1) Extract and plot brain networks connectivity matrix

Automatize the extraction and plotting of brain networks connectivity matrix from CONN results folder, using either Matlab or Python

Script:

MATLAB

extract_correl_mat.m

plot_correl_mat.m

Python

conn_correl_mat.py

2) Plot BOLD denoised timeseries of a pair of ROIs and compute the correlation coefficient

Script:

conn_plot_ts.m

Tutorial & Examples

Please go on my website for some tutorials about these functions