Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

VAE or AAE? #57

Closed
yqy6611 opened this issue Nov 28, 2023 · 1 comment
Closed

VAE or AAE? #57

yqy6611 opened this issue Nov 28, 2023 · 1 comment

Comments

@yqy6611
Copy link

yqy6611 commented Nov 28, 2023

Hi all,
I'd like to learn which cluster file generated by vamb is suitable for feeding to phamb, that via VAE or AAE. Many thanks!
@joacjo
Copy link
Collaborator

joacjo commented Dec 11, 2023

Hi Qiyi Yuan

We have only benchmarked using the clusters from the VAE model to phamb, so I would advise to you that one.
However, you can make your own small benchmark to learn if there is a benefit to use the AAE derived clusters on your data by evaluating the number of HQ vMAGs you achieve from using either one.

@yqy6611 yqy6611 closed this as completed Dec 15, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@yqy6611 @joacjo