Files from DIMACS 2007 DNA barcoding challenge including test and training data, and code related to papers by Kuksa and Pavlovic. Source code recovered from http://seqam.rutgers.edu/projects/bioinfo/barcoding/barcoding.html using Wayback Machine. Software is in SSSKernel-0.1c folder.
Kuksa P, Huang PH, Pavlovic V: Scalable Algorithms for String Kernels with Inexact Matching. NIPS 2008.
Kuksa, P., Pavlovic, V. Efficient alignment-free DNA barcode analytics. BMC Bioinformatics 10 (Suppl 14), S9 (2009). https://doi.org/10.1186/1471-2105-10-S14-S9