Pinned repositories

  1. readdy

    Python / C++ based particle reaction-diffusion simulator

    C++ 13 5

  • ReaDDy documentation

    HTML 1 Updated Jul 18, 2018
  • Jekyll source for documentation

    CSS 3 2 Updated Jul 18, 2018
  • Python / C++ based particle reaction-diffusion simulator

    C++ 13 5 LGPL-3.0 Updated Jul 11, 2018
  • lightweight hdf5 wrapper

    C++ 4 LGPL-3.0 Updated May 22, 2018
  • C++ 3 LGPL-3.0 Updated May 18, 2018
  • Example notebooks to demonstrate the usage of readdy

    Jupyter Notebook 2 1 Updated Apr 26, 2018
  • This library allows to do particle-based reaction-diffusion simulations.

    Java 11 3 Updated Nov 27, 2014
  • This starter kit contains templates and necessary binaries to start simulating right away.

    Shell 3 1 Updated Aug 22, 2014
  • The readdy-input-topology-generator (Topology Generator) creates input topology files for particles and groups, given a file how many particle and how many groups are desired and on which geometry (i.e. potentials) these particles/groups should reside.

    Java 1 1 Updated Aug 21, 2014
  • This tool parses ReaDDy output trajectories and creates an VMD readable output and a VMD .tcl script to visualize it.

    Java 1 Updated Jul 30, 2014