Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

seedMass #13

Closed
zedomel opened this issue Nov 30, 2020 · 13 comments
Closed

seedMass #13

zedomel opened this issue Nov 30, 2020 · 13 comments

Comments

@zedomel
Copy link
Contributor

zedomel commented Nov 30, 2020

Field Value
GUID
Rebipp Class rebipp:InteractionOutcome
Label seedMass
Definition The mass in miligrams of mature seeds of a fruit from a flower exposed to a single visitor.
Comments
Examples
Controlled vocabulary
Darwin Core Class Event
Cardinality One to many
Reference Protocol
@zedomel zedomel added the question Further information is requested label Nov 30, 2020
@zedomel
Copy link
Contributor Author

zedomel commented Dec 7, 2020

Term definition:

The mass in milligrams of mature seeds of a fruit from a flower exposed to a single visitor

@pzermoglio:

the total mass? the average mass?

@fonturbel
Copy link

Average mass (representing the mass o an average single seed)

@zedomel
Copy link
Contributor Author

zedomel commented Jan 25, 2021

@fonturbel we should avoid to restrict the usage of the term to only aggregate measures (e.g. average). People can specify the type of the measurement using Darwin Core term and extensions for that.

Is there any problem with the definition:
The mass of mature seed(s)??

@anselmoeco
Copy link

I think that would be better "the mass of seed(s) from a mature fruit". We have more clarity about the fruit's maturity than the seed's.

@zedomel
Copy link
Contributor Author

zedomel commented Mar 11, 2021

New definition: The mass in milligrams of seed(s) of a mature fruit from a flower exposed to a single visitor
But I'm not sure if the fragment from a flower exposed to a single visitor is needed here. It's look like more a protocol definition than a measurement.

We should think a better way to differentiate measurements taken from exposed/bagged and single/multiple visitors.

@zedomel zedomel mentioned this issue Mar 11, 2021
@fonturbel
Copy link

New definition: The mass in milligrams of seed(s) of a mature fruit from a flower exposed to a single visitor
But I'm not sure if the fragment from a flower exposed to a single visitor is needed here. It's look like more a protocol definition than a measurement.

We should think a better way to differentiate measurements taken from exposed/bagged and single/multiple visitors.

I agree @zedomel the "single visit" part seems not to be necessary

@terezagiannini
Copy link

It seems to me that the last formulation is the best. I would leave "single visit" to be clear about.

@pietrokiyoshi
Copy link

I agree with @zedomel that the last part seem more related with a specific protocol (which would restrict the usage only if this protocol was followed)

@RafaelCBorges
Copy link

I believe it is important to keep that this 'seed' is the product of a single visit, as therefore that seed will be the result from the pollination provided by a known pollinator.
Having this type of data is important to understanding the quality of the pollinator for that plant and will permit further comparison for evaluating if that plant has one, a few or several very efficient pollinators.
@zedomel I think the current definition (The mass in milligrams of seed(s) of a mature fruit from a flower exposed to a single visitor) is very good.
If only one seed is produced from that fruit than the value would be the mass of that single seed, if multiple seeds are produced from that visit, than I believe that the best is to have the mass of each produced seed, this would improve data usability in the long term as the user will be able to calculate the metric that most sooth his work (average, mean, standard deviation), and will also be able to count the number of seeds produced from this single visit.

@pjbergamo
Copy link

I am a bit confused here.
All other terms related to plant reproductive success (conspecific pollen grains on stigma, pollen tubes, fruit set, seed set) were not from single visit measurements.
Why only this one (and specially one that is not as often measured as the aforementioned reproductive success variables) should be measured when a flower is exposed to a single visitor?

My suggestion is to follow the edits made to all other reproductive success variables to this one here.

@arech2003
Copy link

I agree with @pjbergamo

@zedomel
Copy link
Contributor Author

zedomel commented Mar 18, 2021

@pjbergamo I was wondering about that too 👍

So, to maintain the consistence with other reproductive success terms, should we change the definition to exposed to multiple visitors?

@RafaelCBorges and others, what is more common seed mass for single visit or multiple visit? Otherwise, we should have single visit and multiple visit states for every reproductive success terms. I very inclined to add a new term like flowerState (exposed, not exposed) or visitationState (multiple, single).

Another option, since multiple visitations implies multiple interactions, is to create a term numberOfVisits (it can be 0, 1 or any other value greater than 1) and it may give the information if the flower received multiple or single visits or even no visitation.

But, if we go that way, I'm afraid that we will need to review many terms that are already defined as multiple visits.

So, my suggestion to keep it simpler and in order to have a initial release of the standard is to follow what have been done for other reproductive success terms. We can consider to change it in future releases with we realize that we need to differentiate more precisely the multiple from single visitation states.

@RafaelCBorges
Copy link

@zedomel
I think your suggestion to create the new term sounds very interesting.
It would provide that information for the many terms. My suggestion would be to have the visitationState term, with three states (exposed, multiple, single). Exposed would refer to interactions collected in flowers that were not systematically followed, thus the observer only knows that it was exposed. Multiple refers to case where the observer knows about multiple visitor to that flower, and single refers to single visit events.
Combining your suggestion to include the number of visits, it could be exposed, single, multiple, number of visits (1, 2, 3, ...).
Just one thing, zero visits would not be included, right? The data base is for interactions, thus a flower without interactions could not be inserted, isn't it?
As previously mentioned, I think adding this information may improve data usability.

As you pointed, however, there is the issue of other terms. By creating a term to inform the "amount" of visitors it should automatically relate to all terms in that interaction event, thus I believe other terms don´t need to mention the number of visits. (however, I did not participate in the discussion for including multiple visits in the other terms)

If this new term inclusion imply in a big delay, I´m ok with keeping it as multiple visits until improvement is required.

One question though, the terms that include multiple visits would be left blank for single visit interaction event?

@zedomel zedomel closed this as completed Mar 28, 2021
@zedomel zedomel removed the question Further information is requested label Mar 29, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

8 participants