Run PAGER, classify by GOA and WikiPathways, and feed into ChatGPT to summarise

[cytronicoder]

In order to enhance the analysis and summarization capabilities of our gene analysis pipeline, I propose the integration of PAGER with the classification of results using Gene Ontology Annotation (GOA) and WikiPathways, and subsequent summarization using ChatGPT. This feature will allow us to understand the gene sets better and provide succinct summaries for the end-users.

Proposed Workflow

1. PAGER Execution
   • Run PAGER on the identified gene sets to analyze genome-wide gene set relationships.
2. Classification
   • Classify the PAGER results using Gene Ontology Annotation (GOA) and WikiPathways to categorize the gene sets into biologically meaningful groups.
3. Summarization with ChatGPT
   • Feed the classified gene sets and their relationships into ChatGPT to generate a user-friendly summary elucidating the significant findings.