Jkmarx/dataset2 igv #1433
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Jkmarx/dataset2 igv #1433
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Current coverage is 34.05% (diff: 44.16%)@@ develop #1433 diff @@
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Files 327 334 +7
Lines 22709 22807 +98
Methods 0 0
Messages 0 0
Branches 1222 1228 +6
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+ Hits 7715 7768 +53
- Misses 14994 15039 +45
Partials 0 0
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…into jkmarx/dataset2-new-layout
…into jkmarx/dataset2-igv
…ab/refinery-platform into jkmarx/dataset2-igv
jkmarx
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Oct 4, 2016
* Fix #1312 * Enable share button only for data set owners. (#1434) * Jkmarx/sharing modal enhancements (#1436) * Enable share button only for data set owners. * Add helpful text of sharing modal. * Adjust text. * Group API returns group uuid. * Add link to groups in sharing modal. * Add group link to ui. * Add border. * Show filters only for logged in users. (#1437) * Show filters only for logged in users. * Fix spacing. * Mccalluc/remove sphinx (#1438) * Clear out docs directory * Remove sphinx dependencies Nothing else seems to have come in with these commits * Jkmarx/collaboration add member enhancements (#1440) * Add form validation. * Reformat modals to make consistent. * Fix styling. * Reformat code. * Add module unit test. * Add close x to each modal. * Add alerts modal. * Add comments. * Email invite unit test. * Add alert messages to add-group. * Add enter capability for enter. * Fix styling. * Rename method for clarity. * Add unit test. * Shorten time. * Add close to edit group. * Adjust layout and css. * Adjust css on group member edit. * Jkmarx/data import slug validation (#1441) * Remove duplicat file. * Fix div error. * Add error message for invalid slug. * Round percentages. (#1442) * Hackdna/workflow import (#1443) * Refactor get_workflows() * Refactor import_workflow() and check_workflow_inputs() * Code and string formatting * Fix a typo * Avoid relying on description of step inputs in workflow JSON for workflow import and execution * Remove unused get_step_inputs() and get_input_steps() * Improve code style and simplify logic * Remove unused function get_workflow_inputs() * Remove unnecessary conditional and variable * Remove unnecessary variable workflow_relationships, reformat code * Raise an exception instead of returning None * Improve code style * Remove unused code * Avoid redundant UUID generation * Fix log message handling * PEP8 formatting * Remove unused code * PEP8 fixes * Jkmarx/dataset2 new layout (#1413) * Remove tab buttons. * Remove other orange button references. * Refactor, remove style. * Remove style tag. * Remove unused states. * Remove hanging div. * Add conditional for dataset 2. * Move analysis tab to it's own partial. * Move details tab to own partial. * Move files to own partial. * Tab views. * Fix unit test. * Move display into own component. * Set default to files. * Add unit test. * Remove unused code. * Render pivotMatrixView call from within directive. * Unwrap provenance-view-tab watcher. * Add watchers to directive. * Remove console.log. * Correct description. * Update label. * New launch analysis component. * Add disable button conditionals. * Add unit test. * Add save directive. * Move save and reset buttons. * Add unit tests. * Move selected nodes text. * Move file display and config to new layout. * Add view and remove partial. * Add comments. * Adjust popover location. * Move save funtion to node_group partial. * Rename reset to better reflect purpose. * Rename partial. * Move analyses tab into own feature. * Column adjustments. * Parent controller. * Move file to view folder. * Keep only table view. * Fix typo in address. * Change buttons size. * Fix hidden popover. * Add css styling. * Fix padding. * Fix padding * Fix unit test. * Fix reset button. * Remove console. * Fix reset selection count. * Fix scoping issue. * Remove console.log * Fix run analysis ui. * Update color scheme. * Jkmarx/dataset2 igv (#1433) * Remove tab buttons. * Remove other orange button references. * Refactor, remove style. * Remove style tag. * Remove unused states. * Remove hanging div. * Add conditional for dataset 2. * Move analysis tab to it's own partial. * Move details tab to own partial. * Move files to own partial. * Tab views. * Fix unit test. * Move display into own component. * Set default to files. * Add unit test. * Remove unused code. * Render pivotMatrixView call from within directive. * Unwrap provenance-view-tab watcher. * Add watchers to directive. * Remove console.log. * Correct description. * Update label. * New launch analysis component. * Add disable button conditionals. * Add unit test. * Add save directive. * Move save and reset buttons. * Add unit tests. * Move selected nodes text. * Move file display and config to new layout. * Add view and remove partial. * Add comments. * Adjust popover location. * Move save funtion to node_group partial. * Rename reset to better reflect purpose. * Rename partial. * Move analyses tab into own feature. * Column adjustments. * Parent controller. * Move file to view folder. * Keep only table view. * Fix typo in address. * Change buttons size. * Fix hidden popover. * Add css styling. * Fix padding. * Fix padding * Fix unit test. * Fix reset button. * Remove console. * Fix reset selection count. * Fix scoping issue. * Remove console.log * Fix run analysis ui. * Update color scheme. * Add IGV directory. * Add directive. * Include partial in tab. * Add css. * Disable if no nodes are selected. * Add error handling and code to accomodate data set2. * Fix unit test and adjust css. * Add modal for launching igv * Add modal script. * Add visualization directory. * Add module. * Update partials. * Remove unused code. * Add script to partial and launch modal when igv selected. * Remove inline script. * Restructure modals to launch when visualization is selected. * Remove unused service. * Remove ununeccessary ctrl. * Clean up responsibilities. * Add conditions to launching igv. * Add factory. * Add comments. * Controller unit test. * Add visualization ctrl test. * Add directive unit tests. * Add factory unit test. * Comments. * Fix filter bug. * Fix description. * Remove duplicate id. * Add method comment. * Fix unit test. * Remove unused dependency. * Fix logger error message. * Clafity variable name. * Add log error message. * Edit error message.
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Resolves #1271