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Jkmarx/refactor provvis code #2317

Merged
merged 168 commits into from
Jan 17, 2018
Merged

Jkmarx/refactor provvis code #2317

merged 168 commits into from
Jan 17, 2018

Commits on Oct 19, 2017

  1. Remove analysis-launch module.

    @jkmarx
    jkmarx committed Oct 19, 2017
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  2. Remove from unit test.

    @jkmarx
    jkmarx committed Oct 19, 2017
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  3. Remove node-relationship module.

    @jkmarx
    jkmarx committed Oct 19, 2017
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  4. Remove node-mapping module and add third party dependency to refinery… 

    ….js.
    @jkmarx
    jkmarx committed Oct 19, 2017
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  5. Clean up data-set-nav and remove references.

    @jkmarx
    jkmarx committed Oct 19, 2017
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Commits on Oct 24, 2017

  1. Update unit tests.

    @jkmarx
    jkmarx committed Oct 24, 2017
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  2. Remove select workflow module.

    @jkmarx
    jkmarx committed Oct 24, 2017
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  3. Remove igv module.

    @jkmarx
    jkmarx committed Oct 24, 2017
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  4. Fix typo ,

    @jkmarx
    jkmarx committed Oct 24, 2017
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Commits on Oct 25, 2017

  1. Remove solr_table_view.

    @jkmarx
    jkmarx committed Oct 25, 2017
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  2. Remove analysis view.

    @jkmarx
    jkmarx committed Oct 25, 2017
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  3. Remove solr_facet view.

    @jkmarx
    jkmarx committed Oct 25, 2017
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  4. Remove pivot matrix.

    @jkmarx
    jkmarx committed Oct 25, 2017
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  5. Remove data_set_configurator.

    @jkmarx
    jkmarx committed Oct 25, 2017
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  6. Remove IGV references.

    @jkmarx
    jkmarx committed Oct 25, 2017
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  7. Remove the file browser one table and some unneccessary code.

    @jkmarx
    jkmarx committed Oct 25, 2017
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  8. Remove unneeded code since there's only one view.

    @jkmarx
    jkmarx committed Oct 25, 2017
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  9. Remove float thread code.

    @jkmarx
    jkmarx committed Oct 25, 2017
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  10. Remove float thread dependencies.

    @jkmarx
    jkmarx committed Oct 25, 2017
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  11. Remove matrix styling.

    @jkmarx
    jkmarx committed Oct 25, 2017
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  12. Remove old help modals, not dealing with provvis.

    @jkmarx
    jkmarx committed Oct 25, 2017
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  13. Remove tipsy.

    @jkmarx
    jkmarx committed Oct 25, 2017
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  14. Remove tipsy depenency in angular.

    @jkmarx
    jkmarx committed Oct 25, 2017
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  15. Add provvis tab.

    @jkmarx
    jkmarx committed Oct 25, 2017
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Commits on Oct 26, 2017

  1. Remove node relationship model and references.

    @jkmarx
    jkmarx committed Oct 26, 2017
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  2. Remove node_set model and references.

    @jkmarx
    jkmarx committed Oct 26, 2017
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  3. Resolve merge conflicts.

    @jkmarx
    jkmarx committed Oct 26, 2017
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  4. Remove commented code which references old node sets.

    @jkmarx
    jkmarx committed Oct 26, 2017
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  5. Remove node_set_manager reference.

    @jkmarx
    jkmarx committed Oct 26, 2017
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  6. Remove node-set-manager references.

    @jkmarx
    jkmarx committed Oct 26, 2017
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  7. Remove lingering merge tag.

    @jkmarx
    jkmarx committed Oct 26, 2017
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  8. Add node set comments.

    @jkmarx
    jkmarx committed Oct 26, 2017
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  9. Fix comment typo.

    @jkmarx
    jkmarx committed Oct 26, 2017
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  10. Remove added dependency in wrong location and tracked.

    @jkmarx
    jkmarx committed Oct 26, 2017
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  11. Fix height error.

    @jkmarx
    jkmarx committed Oct 26, 2017
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Commits on Oct 27, 2017

  1. Revert data_set.html.

    @jkmarx
    jkmarx committed Oct 27, 2017
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  2. Merge branch 'jkmarx/data-set-1-cleanup' of https://github.com/refine… 

    …ry-platform/refinery-platform into jkmarx/provvis-tab-integration
    @jkmarx
    jkmarx committed Oct 27, 2017
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  3. Seperate out provvis module initialization.

    @jkmarx
    jkmarx committed Oct 27, 2017
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  4. Move ctrls to own file.

    @jkmarx
    jkmarx committed Oct 27, 2017
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  5. Move directives to own files.

    @jkmarx
    jkmarx committed Oct 27, 2017
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  6. Remove inialization module, ctrl, & directives to own file.

    @jkmarx
    jkmarx committed Oct 27, 2017
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  7. Add provvis module.

    @jkmarx
    jkmarx committed Oct 27, 2017
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  8. Fix page redirect.

    @jkmarx
    jkmarx committed Oct 27, 2017
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Commits on Oct 30, 2017

  1. Fix info-panel routing.

    @jkmarx
    jkmarx committed Oct 30, 2017
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  2. Fix bug with panel groups redirect.

    @jkmarx
    jkmarx committed Oct 30, 2017
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  3. Better solution to nav tab.

    @jkmarx
    jkmarx committed Oct 30, 2017
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  4. Add padding to top of infobar.

    @jkmarx
    jkmarx committed Oct 30, 2017
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  5. Add refinery-base class to btns.

    @jkmarx
    jkmarx committed Oct 30, 2017
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  6. Remove modal for popover.

    @jkmarx
    jkmarx committed Oct 30, 2017
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  7. Remove provenance view and template.

    @jkmarx
    jkmarx committed Oct 30, 2017
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Commits on Oct 31, 2017

  1. Cosemetic changes.

    @jkmarx
    jkmarx committed Oct 31, 2017
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  2. Prevent pre-generation from content.js when loading in data-set page.

    @jkmarx
    jkmarx committed Oct 31, 2017
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  3. Add bootbox.

    @jkmarx
    jkmarx committed Oct 31, 2017
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  4. Fix height issue.

    @jkmarx
    jkmarx committed Oct 31, 2017
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  5. Fix missing closed tag.

    @jkmarx
    jkmarx committed Oct 31, 2017
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  6. Fix outdent.

    @jkmarx
    jkmarx committed Oct 31, 2017
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  7. Fix tabbing.

    @jkmarx
    jkmarx committed Oct 31, 2017
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Commits on Nov 1, 2017

  1. Remove global dependency on bootbox.

    @jkmarx
    jkmarx committed Nov 1, 2017
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  2. Remove bootstrap folder and use bower.

    @jkmarx
    jkmarx committed Nov 1, 2017
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  3. Remove unneccessary reference.

    @jkmarx
    jkmarx committed Nov 1, 2017
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  4. Remove old references to older versions of bootstrap.

    @jkmarx
    jkmarx committed Nov 1, 2017
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  5. Revert commented script.

    @jkmarx
    jkmarx committed Nov 1, 2017
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  6. Remove unused contacts view & template.

    @jkmarx
    jkmarx committed Nov 1, 2017
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  7. Remove unused search page.

    @jkmarx
    jkmarx committed Nov 1, 2017
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  8. Remove analyses & analysis views.

    @jkmarx
    jkmarx committed Nov 1, 2017
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  9. Reintroduce missing text.

    @jkmarx
    jkmarx committed Nov 1, 2017
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Commits on Nov 2, 2017

  1. Remove unused spinner library and related code.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  2. Remove fisheye reference not used anywhere.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  3. Grab analyses objects from within angular.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  4. Add files call.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  5. Update solrResponse with assayFiles.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  6. Update name to solrResponse.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  7. Refactor.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  8. Fix typo.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  9. Remove contents.js.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  10. Remove data set configuration no longer used.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  11. Remove other unused apis.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  12. Remove static solr code and unused api modules.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  13. Resolve merge conflict.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  14. Fix merge conflict.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  15. Remove unused window objs.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  16. Fix merge conflict errors.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  17. Remove backbone.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  18. Remove unused references.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  19. Remove static/select2 folder.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  20. Adjust canvas height.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  21. Remove jquery-cookie, unused.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  22. Remove jquery-ui, unused.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  23. Remove static jquery as it's provided via bower.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  24. Remove unused underscroll, provided via bower.

    @jkmarx
    jkmarx committed Nov 2, 2017
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  25. Remove reference to deleted library.

    @jkmarx
    jkmarx committed Nov 2, 2017
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Commits on Nov 7, 2017

  1. Convert timeline-view to a component.

    @jkmarx
    jkmarx committed Nov 7, 2017
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  2. Add doi-view change to component.

    @jkmarx
    jkmarx committed Nov 7, 2017
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  3. Add change-layers-view.

    @jkmarx
    jkmarx committed Nov 7, 2017
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  4. Fix unit test.

    @jkmarx
    jkmarx committed Nov 7, 2017
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  5. Fix typo.

    @jkmarx
    jkmarx committed Nov 7, 2017
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  6. Fix typo.

    @jkmarx
    jkmarx committed Nov 7, 2017
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  7. Add main ctrl unit test.

    @jkmarx
    jkmarx committed Nov 7, 2017
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  8. Fix unit test typo.

    @jkmarx
    jkmarx committed Nov 7, 2017
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Commits on Nov 8, 2017

  1. Fix bug related to finding length of obj.

    @jkmarx
    jkmarx committed Nov 8, 2017
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  2. Fix spacing of file loading

    @jkmarx
    jkmarx committed Nov 8, 2017
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Commits on Nov 14, 2017

  1. Move provvis init to a service.

    @jkmarx
    jkmarx committed Nov 14, 2017
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  2. Add unit test.

    @jkmarx
    jkmarx committed Nov 14, 2017
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Commits on Nov 15, 2017

  1. Split up render into services.

    @jkmarx
    jkmarx committed Nov 15, 2017
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  2. Add dagre library to angular.

    @jkmarx
    jkmarx committed Nov 15, 2017
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  3. Fix typo string.

    @jkmarx
    jkmarx committed Nov 15, 2017
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  4. Add box service.

    @jkmarx
    jkmarx committed Nov 15, 2017
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  5. Add dagre service.

    @jkmarx
    jkmarx committed Nov 15, 2017
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  6. Add drag service.

    @jkmarx
    jkmarx committed Nov 15, 2017
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  7. Add color-coding service.

    @jkmarx
    jkmarx committed Nov 15, 2017
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  8. Add draw doi service.

    @jkmarx
    jkmarx committed Nov 15, 2017
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  9. Add links service.

    @jkmarx
    jkmarx committed Nov 15, 2017
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  10. Add draw timeline service.

    @jkmarx
    jkmarx committed Nov 15, 2017
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  11. Add handle collapse service.

    @jkmarx
    jkmarx committed Nov 15, 2017
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  12. Update link.

    @jkmarx
    jkmarx committed Nov 15, 2017
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  13. Add highlightservice.

    @jkmarx
    jkmarx committed Nov 15, 2017
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Commits on Nov 16, 2017

  1. Create doi service.

    @jkmarx
    jkmarx committed Nov 16, 2017
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  2. Add node selection service.

    @jkmarx
    jkmarx committed Nov 16, 2017
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  3. Update parts service.

    @jkmarx
    jkmarx committed Nov 16, 2017
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  4. Add tooltip service and update helper service.

    @jkmarx
    jkmarx committed Nov 16, 2017
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  5. Update render service.

    @jkmarx
    jkmarx committed Nov 16, 2017
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  6. Add toolbar service.

    @jkmarx
    jkmarx committed Nov 16, 2017
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  7. Update parts service.

    @jkmarx
    jkmarx committed Nov 16, 2017
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  8. Add show service.

    @jkmarx
    jkmarx committed Nov 16, 2017
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  9. Add update layer service.

    @jkmarx
    jkmarx committed Nov 16, 2017
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  10. Add update analysis service.

    @jkmarx
    jkmarx committed Nov 16, 2017
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  11. Add update render service.

    @jkmarx
    jkmarx committed Nov 16, 2017
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  12. Move provvisDecl to service.

    @jkmarx
    jkmarx committed Nov 16, 2017
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  13. Update unit test.

    @jkmarx
    jkmarx committed Nov 16, 2017
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  14. Convert layout service.

    @jkmarx
    jkmarx committed Nov 16, 2017
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  15. Convert motif service.

    @jkmarx
    jkmarx committed Nov 16, 2017
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  16. Remove old js references.

    @jkmarx
    jkmarx committed Nov 16, 2017
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  17. Fix typo.

    @jkmarx
    jkmarx committed Nov 16, 2017
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  18. Slim down update render.

    @jkmarx
    jkmarx committed Nov 16, 2017
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  19. Fix circular import.

    @jkmarx
    jkmarx committed Nov 16, 2017
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Commits on Nov 18, 2017

  1. Revert constructor functions.

    @jkmarx
    jkmarx committed Nov 18, 2017
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Commits on Nov 21, 2017

  1. Fix parts reference.

    @jkmarx
    jkmarx committed Nov 21, 2017
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  2. Fix typo with function call.

    @jkmarx
    jkmarx committed Nov 21, 2017
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Commits on Nov 26, 2017

  1. Fix referencing.

    @jkmarx
    jkmarx committed Nov 26, 2017
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  2. Fix missing node.

    @jkmarx
    jkmarx committed Nov 26, 2017
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  3. Fix typo to grab dom event.

    @jkmarx
    jkmarx committed Nov 26, 2017
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  4. Fixed typo in variable name.

    @jkmarx
    jkmarx committed Nov 26, 2017
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  5. Fix incorrect function call.

    @jkmarx
    jkmarx committed Nov 26, 2017
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Commits on Nov 27, 2017

  1. Fix typo with method call.

    @jkmarx
    jkmarx committed Nov 27, 2017
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  2. Fix bug due to typo.

    @jkmarx
    jkmarx committed Nov 27, 2017
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  3. Comment out unit test.

    @jkmarx
    jkmarx committed Nov 27, 2017
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  4. Remove unused provvis.js

    @jkmarx
    jkmarx committed Nov 27, 2017
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Commits on Dec 25, 2017

  1. Resolve merge conflict.

    @jkmarx
    jkmarx committed Dec 25, 2017
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Commits on Dec 26, 2017

  1. Add some existing unit tests.

    @jkmarx
    jkmarx committed Dec 26, 2017
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Commits on Dec 29, 2017

  1. Add additional service unit tests.

    @jkmarx
    jkmarx committed Dec 29, 2017
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Commits on Dec 31, 2017

  1. Flesh out parts service unit test.

    @jkmarx
    jkmarx committed Dec 31, 2017
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Commits on Jan 1, 2018

  1. Add baseNode tests.

    @jkmarx
    jkmarx committed Jan 1, 2018
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  2. Add more unit tests for other constructors.

    @jkmarx
    jkmarx committed Jan 1, 2018
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Commits on Jan 2, 2018

  1. Fix failing unit tests.

    @jkmarx
    jkmarx committed Jan 2, 2018
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  2. Check wrappers are returned.

    @jkmarx
    jkmarx committed Jan 2, 2018
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  3. More unit tests for doi components.

    @jkmarx
    jkmarx committed Jan 2, 2018
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  4. Generate provvis graph on tab ctrl load.

    @jkmarx
    jkmarx committed Jan 2, 2018
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  5. Remove temp ctrl.

    @jkmarx
    jkmarx committed Jan 2, 2018
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Commits on Jan 3, 2018

  1. Fix blopping loading icon.

    @jkmarx
    jkmarx committed Jan 3, 2018
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  2. Fix styling.

    @jkmarx
    jkmarx committed Jan 3, 2018
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Commits on Jan 16, 2018

  1. Merge branch 'develop' of https://github.com/refinery-platform/refine… 

    …ry-platform into jkmarx/refactor-provvis-code
    @jkmarx
    jkmarx committed Jan 16, 2018
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Commits on Jan 17, 2018

  1. Fix button selection.

    @jkmarx
    jkmarx committed Jan 17, 2018
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  2. Fix typo.

    @jkmarx
    jkmarx committed Jan 17, 2018
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  3. Fix link typo.

    @jkmarx
    jkmarx committed Jan 17, 2018
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  4. Remove unused ctrl.

    @jkmarx
    jkmarx committed Jan 17, 2018
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  5. Fix missing paramater in function call.

    @jkmarx
    jkmarx committed Jan 17, 2018
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  6. Update link.

    @jkmarx
    jkmarx committed Jan 17, 2018
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  7. Minor unit test updates.

    @jkmarx
    jkmarx committed Jan 17, 2018
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