Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Restructure Analysis Metadata Fetching for Celery #3461

Merged
merged 36 commits into from
Oct 22, 2019
Merged

Restructure Analysis Metadata Fetching for Celery #3461

merged 36 commits into from
Oct 22, 2019

Commits on Oct 4, 2019

  1. cut down api requests by passing in result

    @ilan-gold
    ilan-gold committed Oct 4, 2019
    Configuration menu
    Copy the full SHA
    56acbe7 View commit details
    Browse the repository at this point in the history

  2. import generate_auxiliary_file to circumvent potential import issue

    @ilan-gold
    ilan-gold committed Oct 4, 2019
    Configuration menu
    Copy the full SHA
    c22bd0f View commit details
    Browse the repository at this point in the history

  3. remove reference to dsm.tasks

    @ilan-gold
    ilan-gold committed Oct 4, 2019
    Configuration menu
    Copy the full SHA
    0b20f00 View commit details
    Browse the repository at this point in the history

Commits on Oct 7, 2019

  1. store a tool's response information in a django field for repeated use

    @ilan-gold
    ilan-gold committed Oct 7, 2019
    Configuration menu
    Copy the full SHA
    edb457a View commit details
    Browse the repository at this point in the history

  2. re-format if statement

    @ilan-gold
    ilan-gold committed Oct 7, 2019
    Configuration menu
    Copy the full SHA
    64cfb41 View commit details
    Browse the repository at this point in the history

Commits on Oct 8, 2019

  1. allow request to be forced through instead of loading from database

    @ilan-gold
    ilan-gold committed Oct 8, 2019
    Configuration menu
    Copy the full SHA
    e87fa27 View commit details
    Browse the repository at this point in the history

  2. use ast.literal_eval for lists instead of json.loads

    @ilan-gold
    ilan-gold committed Oct 8, 2019
    Configuration menu
    Copy the full SHA
    7d4dce9 View commit details
    Browse the repository at this point in the history

  3. further cache response to invocation call and refactor other cache

    @ilan-gold
    ilan-gold committed Oct 8, 2019
    Configuration menu
    Copy the full SHA
    547213d View commit details
    Browse the repository at this point in the history

  4. reformat and delete unused imports

    @ilan-gold
    ilan-gold committed Oct 8, 2019
    Configuration menu
    Copy the full SHA
    fd824af View commit details
    Browse the repository at this point in the history

Commits on Oct 9, 2019

  1. revert data_set_manager import hack

    @ilan-gold
    ilan-gold committed Oct 9, 2019
    Configuration menu
    Copy the full SHA
    a895dad View commit details
    Browse the repository at this point in the history

  2. bump up the soft_time_limit

    @ilan-gold
    ilan-gold committed Oct 9, 2019
    Configuration menu
    Copy the full SHA
    c8ec629 View commit details
    Browse the repository at this point in the history

Commits on Oct 15, 2019

  1. initial commit for restructuring galaxy requests

    @ilan-gold
    ilan-gold committed Oct 15, 2019
    Configuration menu
    Copy the full SHA
    7761fe8 View commit details
    Browse the repository at this point in the history

  2. get dataset download list more directly from exposed_datasets

    @ilan-gold
    ilan-gold committed Oct 15, 2019
    Configuration menu
    Copy the full SHA
    4022206 View commit details
    Browse the repository at this point in the history

  3. retrieve analysis download list from the AnalysisNodeConnection list

    @ilan-gold
    ilan-gold committed Oct 15, 2019
    Configuration menu
    Copy the full SHA
    f10ad15 View commit details
    Browse the repository at this point in the history

  4. update download_list to use AnalysisNodeConnection outputs

    @ilan-gold
    ilan-gold committed Oct 15, 2019
    Configuration menu
    Copy the full SHA
    aa40889 View commit details
    Browse the repository at this point in the history

  5. remove cache fields on Tools model and re-use full galaxy dataset list

    @ilan-gold
    ilan-gold committed Oct 15, 2019
    Configuration menu
    Copy the full SHA
    f7df2ec View commit details
    Browse the repository at this point in the history

  6. import OUTPUT_CONNECTION

    @ilan-gold
    ilan-gold committed Oct 15, 2019
    Configuration menu
    Copy the full SHA
    37b5c1c View commit details
    Browse the repository at this point in the history

  7. remove force_request parameter

    @ilan-gold
    ilan-gold committed Oct 15, 2019
    Configuration menu
    Copy the full SHA
    4523a82 View commit details
    Browse the repository at this point in the history

  8. fix formatting on exposed_dataset_list paramter

    @ilan-gold
    ilan-gold committed Oct 15, 2019
    Configuration menu
    Copy the full SHA
    fbc5952 View commit details
    Browse the repository at this point in the history

  9. fix formatting

    @ilan-gold
    ilan-gold committed Oct 15, 2019
    Configuration menu
    Copy the full SHA
    c3f56ba View commit details
    Browse the repository at this point in the history

Commits on Oct 16, 2019

  1. add creating_job option to create output name to prevent repeat requests

    @ilan-gold
    ilan-gold committed Oct 16, 2019
    Configuration menu
    Copy the full SHA
    25403c9 View commit details
    Browse the repository at this point in the history

  2. revert use of rename s3 as separate task

    @ilan-gold
    ilan-gold committed Oct 16, 2019
    Configuration menu
    Copy the full SHA
    2786cfa View commit details
    Browse the repository at this point in the history

  3. remove RenameS3FileTask task

    @ilan-gold
    ilan-gold committed Oct 16, 2019
    Configuration menu
    Copy the full SHA
    62094f4 View commit details
    Browse the repository at this point in the history

  4. revert fabricrc.sample file changes

    @ilan-gold
    ilan-gold committed Oct 16, 2019
    Configuration menu
    Copy the full SHA
    2814e62 View commit details
    Browse the repository at this point in the history

  5. fix tool_manager mocking to match new behavior

    @ilan-gold
    ilan-gold committed Oct 16, 2019
    Configuration menu
    Copy the full SHA
    6a3ae90 View commit details
    Browse the repository at this point in the history

  6. fix formatting on test

    @ilan-gold
    ilan-gold committed Oct 16, 2019
    Configuration menu
    Copy the full SHA
    4df07bd View commit details
    Browse the repository at this point in the history

Commits on Oct 21, 2019

  1. resolve ilya's requests

    @ilan-gold
    ilan-gold committed Oct 21, 2019
    Configuration menu
    Copy the full SHA
    9482624 View commit details
    Browse the repository at this point in the history

  2. update field names

    @ilan-gold
    ilan-gold committed Oct 21, 2019
    Configuration menu
    Copy the full SHA
    d3848d9 View commit details
    Browse the repository at this point in the history

  3. update file extension in name

    @ilan-gold
    ilan-gold committed Oct 21, 2019
    Configuration menu
    Copy the full SHA
    b056bae View commit details
    Browse the repository at this point in the history

  4. remove check on invocation being None

    @ilan-gold
    ilan-gold committed Oct 21, 2019
    Configuration menu
    Copy the full SHA
    5dbd46b View commit details
    Browse the repository at this point in the history

Commits on Oct 22, 2019

  1. remove unneeded fields and fix tests

    @ilan-gold
    ilan-gold committed Oct 22, 2019
    Configuration menu
    Copy the full SHA
    f34312b View commit details
    Browse the repository at this point in the history

  2. reinsert "galaxy_dataset_name" to AnalysisNodeConnection

    @ilan-gold
    ilan-gold committed Oct 22, 2019
    Configuration menu
    Copy the full SHA
    204dca4 View commit details
    Browse the repository at this point in the history

  3. remove unnecessary get_galaxy_dataset_download_list function and tests

    @ilan-gold
    ilan-gold committed Oct 22, 2019
    Configuration menu
    Copy the full SHA
    0a43ab5 View commit details
    Browse the repository at this point in the history

  4. handle galaxy error

    @ilan-gold
    ilan-gold committed Oct 22, 2019
    Configuration menu
    Copy the full SHA
    1118741 View commit details
    Browse the repository at this point in the history

  5. update use of json.loads() and json.dumps() to be liter_eval with dict

    @ilan-gold
    ilan-gold committed Oct 22, 2019
    Configuration menu
    Copy the full SHA
    4553883 View commit details
    Browse the repository at this point in the history

  6. change back to ast.literal_eval from json.loads

    @ilan-gold
    ilan-gold committed Oct 22, 2019
    Configuration menu
    Copy the full SHA
    63106a0 View commit details
    Browse the repository at this point in the history