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Update docs about transforms #2496

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merged 2 commits into from Jul 4, 2023
Merged

Update docs about transforms #2496

merged 2 commits into from Jul 4, 2023

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abey79
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@abey79 abey79 commented Jun 21, 2023

What

Release 0.7 introduced a new rr.log_transform3d() and deprecated rr.log_rigid3(). This PR updates the documentation to reflect this.

  • improved the wording in the space and transform section
  • updated code examples
  • marked log_rigid3 as deprecated in python's doc

Checklist

PR Build Summary: https://build.rerun.io/pr/2496

Docs preview: https://rerun.io/preview/bf70108/docs
Examples preview: https://rerun.io/preview/bf70108/examples

@abey79 abey79 added the 📖 documentation Improvements or additions to documentation label Jun 21, 2023
@abey79 abey79 marked this pull request as ready for review June 21, 2023 08:42
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abey79 commented Jun 21, 2023

Here is a write up of how I approached the original text and the ways it confused me (and made me feel dumb).

Pre-existing mental model

  • My main mental model adjacent to this topic is the scene graph, where many/most nodes have transforms w.r.t their parent (as such, they are typically not considered "split" in multiple "coordinate systems" by their transforms).
  • Coordinates systems and transforms really are standard stuff I know about. This chapter isn't going to teach me much.

Initial instincts

Because of what precedes, my first read wasn't thorough, and I quickly developed these initial instincts:

  • One space view contains/displays one space.
  • Transforms === 3D to 3D affine transforms.

This proved sufficient to make useful use of the Python API, working on the example, etc. It wasn't sufficient to understand how/why everything worked, but who cares if it works, right?

Confusions

Cue actually working on the "Spaces and Transforms" docs. Soon enough it appears that my mental model of it all is broken and I need to thoroughly read this stuff (there was a bit grief curve process with some cursing at the docs for a bit). Here is a somewhat chronological of what went on in my mind:

Every Entity in Rerun exists in some Space. This is at the core of how Rerun organizes the visualizations of the data
that you have logged. In the Rerun Viewer you view data by configuring a "Space View," which is a view
of a set of entities as seen from a particular Space.

It took me many reads to realise that this didn't mean "one space view <-> one space".

A "Space" is, very loosely, a generalization of the idea of a "Coordinate System" (sometimes known as a "Coordinate Frame") to arbitrary data. If a collection of
entities are part of the same Space, it means they can be rendered together in the same view, using the same
"coordinates."

Why is that we're not just call them "coordinate systems" then?

As some examples:

  • For 2d and 3d geometric primitives this means they share the same origin and coordinate system.
  • For scalar plots it means they share the same plot axes.
  • For text logs, it means they share the same conceptual stream.

Okaaay. That's kind of an edge case, feels kinda weird to shoehorn that into the Space concept, but ok. I'm going to ignore that text stuff and continue thinking that "transform === 3D to 3D affine transform".

Which entities belong to which Spaces is a function of the Transform system, which uses the following rules to define
the connectivity of Spaces:

  1. Every unique Entity Path defines a potentially unique space.
  2. Unless otherwise specified, every path is trivially connected to its parent by the Identity transform.
  3. Logging a transform to a path defines the relationship between that path and its parent (replacing the Identity
    connection).
  4. Only paths which are connected by the Identity transform are effectively considered to be part of the same
    Space. All others are considered to be disjoint.

Oh, so we can't have two entities with a transform displayed in the same space view. That's really stupid. (Proceeds to realise that this clearly contradicts experience)

Note that in the absence of transforms, all entity paths are fully connected by the Identity transform, and therefore
share the same Space. However, as soon as you begin to log transforms, you can end up with additional spaces.

They do insist on this stuff...

Consider the following scenario:

rr.log_points("world/mapped_keypoints", ...)
rr.log_points("world/robot/observed_features", ...)
rr.log_rigid3("world/robot", ...)

There are 4 parent/child entity relationships represented in this hierarchy.

  • (root) -> world
  • world -> world/mapped_keypoints
  • world -> world/robot
  • world/robot -> world/robot/observed_features

The call: rr.log_rigid3("world/robot", ...) only applies to the relationship: world -> world/robot because the
logged transform (world/robot) describes the relationship between the entity and its parent (world). All of the
other relationships are considered to be an identity transform.

This leaves us with two spaces. In one space, we have the entities world, and world/mapped_keypoints. In the other
space we have the entities world/robot and world/robot/observed_features.

At this point, I really read that bit hoping to get some insight. I even drew a little scene graph thing:

image

So we have tree. Then a transform splits the tree into two sub-trees for some reason (although there are transforms everywhere, just identity, right?). And for some reason I supposedly can't put both tree in the same space view. Long story short, that whole example (which took some effort to replay in my head) just confirmed my previous (flawed) understanding.

Practically speaking, this means that the position values of the points from world/mapped_keypoints and the points
from world/robot/observed_features are not directly comparable. If you were to directly draw these points in a single
coordinate system the results would be meaningless.

Wuut?! I mean, yeah of course, if you disregard the transforms but why would one even consider this when we're in the middle of discussing them.

Fortunately, Rerun can still put these entities in the same Space View because it is able to automatically transform data between different spaces.

Oh I knew it! That doc is contradicting itself. Pitchforks! Github Issues!

in the next section:

Rerun transforms are currently limited to connections between Spatial views of 2D or 3D data. There are 3 types of
transforms that can be logged:

  • Rigid3D transforms define a pure 3D translation + rotation relationship between two paths.
    rerun.log_rigid3)
  • Pinhole transforms define a 3D -> 2D camera projection. (See:
    rerun.log_pinhole)

Some realisations going on here, out of the willingness to now learn some stuff given the current level of confusion:

  • Transforms can be something else than "3D to 3D affine transform".
  • pinhole isn't just a glorified 3D object to represent a camera in a 3D space, it's actually a 2D to 3D transform. That's actually kind of cool, wonder if there are other such generalised transforms?
  • Unknown transforms specify that the data cannot be transformed. In this case it will not be possible to combine the
    data into a single view and you will need to create two separate views to explore the data. (See:
    rerun.log_unknown_transform)

Ok so now we're splitting scene graphs, but for real? Does it mean we really can't put both sub-trees in the same Space View, this time?

Conclusion

By now, my mental model (state? 😅) probably doesn't allow me to make substantial improvements how things are presented here (beyond the probably naive changes currently included in this PR). Here are a few random thoughts though:

  • Do we really need an (explicit) concept of "Space"? What would it take to remove it entirely from user-facing stuff docs/SDKs?
  • Lots of concepts here are adjacent, but not fully overlapping, with "common stuff" (scene graphs, etc.)—sometime reusing the common names (transform comes to mind) in a way that is slightly uncommon. It's probably a bad thing, but if we want to keep doing that, we should very clearly dispel any a priori intuition the reader might have, and that should happen very early in the doc.
  • After yet another read, I now realise that "For scalar plots it means they share the same plot axes" doesn't just mean "2D scene graph stuff / just like 3D but in 2D", without realising there there might be plot-specific semantic content there too (which I probably not fully understand yet). Shoehorning something that very much look like "regular" spatial transform into splitting plot and text streams feels weird. How does that even work? Will a transform3d really split my text log into two views?

@teh-cmc teh-cmc marked this pull request as draft June 26, 2023 08:02
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teh-cmc commented Jun 26, 2023

Drafting so it gets out of the review queue

@emilk emilk marked this pull request as ready for review July 4, 2023 12:00
@emilk emilk merged commit b79216e into main Jul 4, 2023
20 checks passed
@emilk emilk deleted the antoine/transforms-docs branch July 4, 2023 12:00
jleibs added a commit that referenced this pull request Jul 27, 2023
…nts - 2023-07-27 (#2842)

## [0.8.0](v0.7.0...v0.8.0) -
Infrastructure investments and more transform improvements - 2023-07-27

[Rerun](https://www.rerun.io/) is an easy-to-use visualization toolbox
for computer vision and robotics.

* Python: `pip install rerun-sdk`
* Rust: `cargo add rerun` and `cargo install rerun-cli`
* Online demo: <https://demo.rerun.io/version/0.8.0/>


### Overview & Highlights
- `log_pinhole` is now easier to use in simple cases and supports
non-RDF camera coordinates.
[#2614](#2614)
- You only need to set focal length and optional principal point instead
of setting the full 3x3 matrix.
- There is also a new argument: `camera_xyz` for setting the coordinate
system. The default is RDF (the old
default). This affects the visible camera frustum, how rays are
projected when hovering a 2D image, and how depth
   clouds are projected.
- The visualizer can now show coordinate arrows for all affine
transforms within the view.
[#2577](#2577)
- Linestrips and oriented bounding boxes can now be logged via batch
APIs in python.
- See: `log_linestrips_2d`, `log_linestrips_3d`,
[#2822](#2822) and `log_obbs`
[#2823](#2823)
- Rust users that build their own Viewer applications can now add fully
custom Space Views. Find more information
[here](https://www.rerun.io/docs/howto/extend-ui#custom-space-views-classes).
- New optional `flush_timeout` specifies how long Rerun will wait if a
TCP stream is disconnected during a flush.
[#2821](#2821)
- In Rust, `RecordingStream::connect` now requires `flush_timeout`
specified as an `Option<Duration>`.
- To keep default behavior, this can be specified using the
`rerun::default_flush_time()` helper.
- In Python `flush_init_sec` is now an optional argument to
`rr.connect()`
- In Rust, the `RecordingStream` now offers a stateful time API, similar
to the Python APIs. [#2506](#2506)
- You can now call `set_time_sequence`, `set_time_seconds`, and
`set_time_nanos` directly on the `RecordingStream`,
     which will set the time for all subsequent logs using that stream.
- This can be used as an alternative to the the previous
`MsgSender::with_time` APIs.
- The Rerun SDK now defaults to 8ms long microbatches instead of 50ms.
This makes the default behavior more suitable
for use-cases like real-time video feeds.
[#2220](#2220)
- Check out [the microbatching
docs](https://www.rerun.io/docs/reference/sdk-micro-batching) for more
information
   on fine-tuning the micro-batching behavior.
- The web viewer now incremental loads `.rrd` files when streaming over
HTTP. [#2412](#2412)

![Open Photogrammetry
Preview](https://static.rerun.io/9fa26e73a197690e0403cd35f29e31c2941dea36_release_080_photogrammetry_full.png)

### Ongoing Refactors
- There have been a number of significant internal changes going on
during this release with little visible impact.
This work will land across future releases, but is highlighted here
since much of it is visible through the
   changelog.
- The layout of the Viewer is now controlled by a Blueprint datastore.
In the future this will allow for direct API
control of the layout and configuration of the Viewer. A very early
prototype of this functionality is available
    via the `rerun.experimental` module in Python.
- An entirely new code-generation framework has been brought online for
Rust, Python and C++. This will eventually enable
new object-centric APIs with a more scalable, consistent, and ergonomic
experience.
- Bringup of C++ support is now underway and will eventually become our
third officially supported SDK language.

### Known Regressions
- Due to the Blueprint storage migration, blueprint persistence on web
is currently broken. Will be resolved in:
  [#2579](#2579)

### In Detail
#### 🐍 Python SDK
- Clean up warnings printed when `rr.init` hasn't been called
[#2209](#2209)
- Normalise Python typing syntax to 3.8+
[#2361](#2361)
- Simpler, sturdier stateful time tracking in both SDKs
[#2506](#2506)
- Fix not taking np.array for single colors
[#2569](#2569)
- Add a basic pyright config
[#2610](#2610)
- Improve `log_pinhole` and support non-RDF pinholes
[#2614](#2614)
- Expose batch APIs for linestrips
[#2822](#2822)
- Expose batch APIs for oriented bounding boxes
[#2823](#2823)

#### 🦀 Rust SDK
- Add example for adding custom Space Views
[#2328](#2328)
- Simpler, sturdier stateful time tracking in both SDKs
[#2506](#2506)
- Automagic flush when `take()`ing a `MemorySinkStorage`
[#2632](#2632)
- Logging SDK: Log warnings if user data is dropped
[#2630](#2630)
- Add support for `RecordingStream::serve`
[#2815](#2815)

#### 🌁 Viewer Improvements
- Better handle scroll-to-zoom in 3D views
[#1764](#1764)
- Add command to screenshot the application
[#2293](#2293)
- Show layout in blueprint tree view
[#2465](#2465)
- Double-click to select entity
[#2504](#2504)
- Add Rerun.io link/text in top bar
[#2540](#2540)
- New auto-layout of space views
[#2558](#2558)
- Add 'Dump datastore' command to palette
[#2564](#2564)
- Support any `dtype` for depth images
[#2602](#2602)
- Change "Save Selection" command to Cmd+Alt+S
[#2631](#2631)
- Consistent transform visualization for all entities with transforms
[#2577](#2577)
- Improve `log_pinhole` and support non-RDF pinholes
[#2614](#2614)

#### 🚀 Performance Improvements
- Flush the batches every 8ms instead of 50 ms
[#2220](#2220)
- Replace `image` crate jpeg decoder with zune-jpeg
[#2376](#2376)
- Stream `.rrd` files when loading via http
[#2412](#2412)

#### 🪳 Bug Fixes
- Fix deadlock when misusing the Caches
[#2318](#2318)
- Fix unstable order/flickering of "shown in" space view list on
selection [#2327](#2327)
- Fix transforms not applied to connections from transform context
[#2407](#2407)
- Fix texture clamping and color gradient selection being displayed
incorrectly [#2394](#2394)
- Fix projected ray length
[#2482](#2482)
- Tweak the depth bias multiplier for WebGL
[#2491](#2491)
- Clip image zoom rectangle
[#2505](#2505)
- Fix missing feature flags for benchmarks
[#2515](#2515)
- `run_all.py` script fixes
[#2519](#2519)
- Update egui_tiles with fix for drag-and-drop-panic
[#2555](#2555)
- Convert objectron proto.py back to using typing.List
[#2559](#2559)
- Exclude from `objectron/proto/objectron/proto.py` from `just
py-format` [#2562](#2562)
- Fix pinhole visualization not working with camera extrinsics &
intrinsics on the same path
[#2568](#2568)
- Fix: always auto-layout spaceviews until the user interveens
[#2583](#2583)
- Fix freeze/crash when logging large times
[#2588](#2588)
- Update egui_tiles to fix crash
[#2598](#2598)
- Fix clicking object with single instance (of every component)
selecting instance instead of entity
[#2573](#2573)
- Cleanup internal data-structures when process has been forked
[#2676](#2676)
- Fix shutdown race-condition by introducing a flush_timeout before
dropping data [#2821](#2821)
- Fix ui-scale based point/line sizes incorrectly scaled when zooming
based on horizontal dimension
[#2805](#2805)
- Fix visibility toggle for maximized Space Views
[#2806](#2806)
- Fix loading file via CLI
[#2807](#2807)
- Fix disconnected space APIs in Python SDK
[#2832](#2832)
- Avoid unwrap when generating authkey
[#2804](#2804)

#### 🧑‍🏫 Examples
- Add example template
[#2392](#2392)
- Show hidden url search param in `app.rerun.io`
[#2455](#2455)
- Minimal example of running an intel realsense depth sensor live
[#2541](#2541)
- Add a simple example to display Open Photogrammetry Format datasets
[#2512](#2512)
- Move `examples/api_demo` -> `tests/test_api`
[#2585](#2585)

#### 📚 Docs
- Docs: link to `rr.save` and suggest `rerun` instead of `python -m
rerun` [#2586](#2586)
- Update docs about transforms
[#2496](#2496)
- Fixup remaining usages of log_rigid3 in docs
[#2831](#2831)

#### 🎨 Renderer Improvements
- Expose type erased draw data that can be consumed directly
[#2300](#2300)
- Use less `mut` when using `RenderContext`
[#2312](#2312)

#### 🧑‍💻 Dev-experience
- Better error messages in build.rs
[#2173](#2173)
- Recommend sccache in CONTRIBUTING.md
[#2245](#2245)
- introduce `re_tracing`
[#2283](#2283)
- lint: standardize formatting of let-else-return statements
[#2297](#2297)
- Centralized build tools in `re_build_tools`
[#2331](#2331)
- Lint for explicit quotes
[#2332](#2332)
- Added example screenshot instructions in `just upload --help`
[#2454](#2454)
- Added support for puling image from an URL to `upload_image.py`
[#2462](#2462)
- `setup_dev.sh` now installs pngcrush
[#2470](#2470)
- Added docs/code-examples to the directories checked by py-lint and
py-format [#2476](#2476)
- Link to demo in PR + check checkboxes
[#2543](#2543)
- Add script to find external issues we haven't commented on
[#2532](#2532)
- Move CI-related scripts to its own folder
[#2561](#2561)
- Render PR description as template
[#2563](#2563)
- Add basic testing automation against all version of Python using nox
[#2536](#2536)
- Run clippy on public API too
[#2596](#2596)
- Bump all `py-lint`-related package versions
[#2600](#2600)
- Crates publishing script
[#2604](#2604)
- Fix rust docs deploy
[#2615](#2615)
- Add support for .gitignore to scripts/lint.py
[#2666](#2666)

#### 🗣 Refactors
- Refactor space-view dependencies:
- Move spatial space view to its own crate
[#2286](#2286)
- Separate crate for bar chart space view
[#2322](#2322)
- Separate crate for time series space view
[#2324](#2324)
- Separate crate for tensor space view
[#2334](#2334)
- Separate viewport related files out to a new re_viewport crate
[#2251](#2251)
- Remove timepanel dependency from viewport
[#2256](#2256)
- New trait system for SpaceViews:
- Initial Space View trait & port of text space views to the new Space
View trait system [#2281](#2281)
- Extend/iterate on SpaceViewClass framework with SceneContext & port
SpatialSpaceView scene parts
[#2304](#2304)
- Finalize move of SpatialSpaceView to SpaceViewClass trait framework
[#2311](#2311)
- Typename cleanup in SpaceViewClass framework
[#2321](#2321)
- Automatic fallback for unrecognized Space View Class, start removing
old ViewCategory [#2357](#2357)
- Rename ScenePart -> ViewPartSystem + related renamings
[#2674](#2674)
- Dynamically registered space view (part/context) systems
[#2688](#2688)
- Viewer's command queue is now a channel, allowing to queue commands
without mutable access
[#2339](#2339)
- Break up app.rs into parts
[#2303](#2303)
- Break out `re_log_types::component_types` as `re_components`
[#2258](#2258)
- Introduce StoreHub and rename Recording->Store
[#2301](#2301)
- Move StoreHub out of the Viewer during Update
[#2330](#2330)
- Expand CommandSender to support SystemCommand
[#2344](#2344)
- Use `camino` crate for UTF8 paths in `re_types_builder`
[#2637](#2637)
- Separate 2d & 3d spaceview classes, removal of `ViewCategory`,
`SpaceViewClass` driven spawn heuristics
[#2716](#2716)
- Move object property heuristics to heuristics.rs
[#2764](#2764)

#### 📦 Dependencies
- Version `rand` & friends at workspace level
[#2508](#2508)
- Update to PyO3 0.19
[#2350](#2350)
- Pin `half` to `2.2.1`
[#2587](#2587)

#### 📘 Blueprint Changes
- Drive blueprints off of a DataStore
[#2010](#2010)
- Split SpaceView -> SpaceViewState + SpaceViewBlueprint
[#2188](#2188)
- Split the Blueprint into AppBlueprint and ViewportBlueprint
[#2358](#2358)
- Swap the naming of Viewport and ViewportBlueprint
[#2595](#2595)
- Basic persistence for blueprints
[#2578](#2578)

#### 🏭 New Codegen Framework
- Codegen/IDL 1: add more build tools
[#2362](#2362)
- Codegen/IDL 2: introduce `re_types_builder`
[#2363](#2363)
- Codegen/IDL 3: introduce `re_types`
[#2369](#2369)
- Codegen/IDL 4: definitions for a `Points2D` archetype
[#2370](#2370)
- Codegen/IDL 5: auto-generated Python code for `Points2D`
[#2374](#2374)
- Codegen/IDL 7: handwritten Python tests and extensions for `Points2D`
[#2410](#2410)
- Codegen/IDL 6: auto-generated Rust code for `Points2D`
[#2375](#2375)
- Codegen/IDL 8: handwritten Rust tests and extensions for `Points2D`
[#2432](#2432)
- Codegen'd Rust/Arrow 1: upgrading to actual `TokenStream`s
[#2484](#2484)
- Codegen'd Rust/Arrow 2: matching legacy definitions
[#2485](#2485)
- Codegen'd Rust/Arrow 3: misc fixes & improvements
[#2487](#2487)
- Codegen'd Rust/Arrow 4: out-of-sync definitions CI detection
[#2545](#2545)
- Codegen'd Rust/Arrow 5: doc, definitions and regression tests for
combinatorial affixes
[#2546](#2546)
- Codegen'd Rust/Arrow 6: serialization
[#2549](#2549)
- Codegen'd Rust/Arrow 7: deserialization
[#2554](#2554)
- Codegen'd Rust/Arrow 8: carry extension metadata across transparency
layers [#2570](#2570)
- Codegen'd Rust/Arrow 9: Rust backport!
[#2571](#2571)
- End-to-end cross-language roundtrip tests for our archetypes
[#2601](#2601)
- Automatically derive `Debug` and `Clone` in Rust backend
[#2613](#2613)
- Generating (de)serialization code for dense unions in Rust backend
[#2626](#2626)
- Fix `FixedSizeList` deserialization edge-case + trivial optimizations
[#2673](#2673)
- Make `Datatype` & `Component` both inherit from `Loggable`
[#2677](#2677)
- Roundtrip-able `Transform3D`s
[#2669](#2669)
- Don't inline recursive datatypes in Rust backend
[#2760](#2760)
- Automatically derive `tuple_struct` attr and trivial `From` impls
where possible [#2772](#2772)
- Introduce roundtrip-able `Points3D` archetype (py + rs)
[#2774](#2774)
- Add `fmt::Debug` implementations to various types.
[#2784](#2784) (thanks
[@kpreid](https://github.com/kpreid)!)
- Isolate testing types in Rust backend
[#2810](#2810)
- Fix out-of-sync codegen hash
[#2567](#2567)
- Python backport: add `log_any()`
[#2581](#2581)
- Integrate unit examples into codegen stack
[#2590](#2590)
- Disable codegen on windows
[#2592](#2592)
- Python codegen: big cleaning and paving the way towards transforms
[#2603](#2603)
- Automatically assume arrow transparency for components
[#2608](#2608)
- Fix wrong path being `rerun_if_changed()` in `compute_dir_hash`
[#2612](#2612)
- Support transparency at the semantic layer
[#2611](#2611)
- Don't use builtin `required` anymore, introduce `nullable` instead
[#2619](#2619)
- Rust codegen: generate proper docstrings
[#2668](#2668)
- Support nullable Arrow unions using virtual union arms
[#2708](#2708)
- Introduce support for querying Archetypes
[#2743](#2743)
- Introduce legacy shims and migrate DataCell to re_types::Component
[#2752](#2752)

#### 🌊 Starting work on C++
- Seed of C and C++ SDKs
[#2594](#2594)
- Move C++ SDK to own folder
[#2624](#2624)
- C++ codegen [#2678](#2678)
- C++ codegen for reporting arrow data type for structs
[#2756](#2756)
- Don't inline recursive datatypes in C++ backend
[#2765](#2765)
- C++ codegen to_arrow_data_type for unions
[#2766](#2766)
- C++ codegen arrow serialize non-union components/datatypes without
nested rerun types [#2820](#2820)
- C++ codegen of structs and unions
[#2707](#2707)
- Fix cpp formatter differences
[#2773](#2773)

#### 🤷‍♂️ Other
- test_api: set different app_id based on what test is run
[#2599](#2599)
- Introduce `rerun compare` to check whether 2 rrd files are
functionally equivalent
[#2597](#2597)
- Remove `files.exclude` in vscode settings
[#2621](#2621)
- Support feature-gated rust attributes
[#2813](#2813)

### Checklist
* [x] I have read and agree to [Contributor
Guide](https://github.com/rerun-io/rerun/blob/main/CONTRIBUTING.md) and
the [Code of
Conduct](https://github.com/rerun-io/rerun/blob/main/CODE_OF_CONDUCT.md)
* [x] I've included a screenshot or gif (if applicable)
* [x] I have tested [demo.rerun.io](https://demo.rerun.io/pr/2842) (if
applicable)

- [PR Build Summary](https://build.rerun.io/pr/2842)
- [Docs preview](https://rerun.io/preview/pr%3Arelease-0.8/docs)
- [Examples preview](https://rerun.io/preview/pr%3Arelease-0.8/examples)
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