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Achievement: Pair Extraordinairex2Achievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor
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ricomnl/README.md

Hi there 👋

Currently @ retro.bio. I'm interested in gene regulatory networks, bioelectricity and longevity.

Scientific Software

  • nf-encyclopedia - A NextFlow pipeline for chromatogram library DIA proteomics workflows

Contributions:

  • scvi-tools
  • redun
  • kb_python
  • During the bitsinbio hackathon in March '22, I contributed to graphein
  • EncyclopeDIA - a library search engine comprised of several algorithms for data independent acquisition (DIA) mass spectrometry data analysis: encyclopedia
  • Gopher - Gene ontology enrichment analysis using protein expression: gopher

Some other stuff I've worked on:

While participating in the How To Grow (Almost) Anything course on Synthetic Bio:

Fun projects

Twitter: @ricomnl

Website: https://ricomnl.com

Pinned Loading

  1. podcast_search podcast_search Public

    Python 1

  2. opentron_digits opentron_digits Public

    An opentron protocol to draw digits.

    Jupyter Notebook

  3. bioinformatics-pipeline-tutorial bioinformatics-pipeline-tutorial Public

    A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.

    Python 12 24

  4. protein_structure_analysis protein_structure_analysis Public

    Analysis of protein structures

    Jupyter Notebook

  5. instacart2vec instacart2vec Public

    Bachelor Thesis

    Jupyter Notebook

  6. hypermaze/proseflow hypermaze/proseflow Public

    Jupyter Notebook