Live visualization through Script Builder

[frabjous5]

It would be great to have live visualization (preferably VMD) through this application. See feature described in Section 3.4.7 of the OpenMM Zephyr 2.0 User Guide.

[rmcgibbo]

I'm not sure this is really within the scope of the HTML5 script builder. Here, we're basically building up text (the OpenMM script) from a set of drop down menus. Since the webbuilder never actually runs the script (or python or any compiled binaries), this is a really "big" feature. The webbuilder doesn't require that your computer even have OpenMM (or vmd) installed; It runs on a iPhone.

We could add a jmol applet or something to visualize the starting pdb in the browser.