Installing issue (looks due to qpdf dependecy)

[Ludo-vic-D]

hi,
Working on cloudera machine learning, create a new blank project,
launch a R 4.1 session and just try to install pdftools :

the error
: In file included from libqpdf/Pl_DCT.cc:1:
include/qpdf/Pl_DCT.hh:27:10: fatal error: jpeglib.h: No such file or directory
27 | #include <jpeglib.h>
| ^~~~~~~~~~~

can you help me to find a solution?

sessionInfo()
R version 4.1.1 (--)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.6 LTS

Matrix products: default
BLAS/LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so

locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] Rook_1.1-1 RJSONIO_1.3-1.5 Cairo_1.2-0

loaded via a namespace (and not attached):
[1] compiler_4.1.1 tools_4.1.1 codetools_0.2-18 brew_1.0-6
install.packages("pdftools")
Installing package into ‘/home/cdsw/.local/lib/R/4.1/library’
(as ‘lib’ is unspecified)
also installing the dependencies ‘Rcpp’, ‘qpdf’

trying URL 'https://cran.rstudio.com/src/contrib/Rcpp_1.0.10.tar.gz'
Content type 'application/x-gzip' length 2936173 bytes (2.8 MB)

downloaded 2.8 MB

trying URL 'https://cran.rstudio.com/src/contrib/qpdf_1.3.2.tar.gz'
Content type 'application/x-gzip' length 322552 bytes (314 KB)

downloaded 314 KB

trying URL 'https://cran.rstudio.com/src/contrib/pdftools_3.3.3.tar.gz'
Content type 'application/x-gzip' length 936280 bytes (914 KB)

downloaded 914 KB

• installing source package ‘Rcpp’ ...
  ** package ‘Rcpp’ successfully unpacked and MD5 sums checked
  ** using staged installation
  ** libs
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c api.cpp -o api.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c attributes.cpp -o attributes.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c barrier.cpp -o barrier.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c date.cpp -o date.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c module.cpp -o module.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c rcpp_init.cpp -o rcpp_init.o
  g++ -std=gnu++14 -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/usr/local/lib/R/lib -lR
  installing to /home/cdsw/.local/lib/R/4.1/library/00LOCK-Rcpp/00new/Rcpp/libs
  ** R
  ** inst
  ** byte-compile and prepare package for lazy loading
  ** help
  *** installing help indices
  ** building package indices
  ** installing vignettes
  ** testing if installed package can be loaded from temporary location
  ** checking absolute paths in shared objects and dynamic libraries
  ** testing if installed package can be loaded from final location
  ** testing if installed package keeps a record of temporary installation path
• DONE (Rcpp)
• installing source package ‘qpdf’ ...
  ** package ‘qpdf’ successfully unpacked and MD5 sums checked
  ** using staged installation
  Using bundled qpdf (recommended)
  ** libs
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c bindings.cpp -o bindings.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/BitStream.cc -o libqpdf/BitStream.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/BitWriter.cc -o libqpdf/BitWriter.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/Buffer.cc -o libqpdf/Buffer.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/BufferInputSource.cc -o libqpdf/BufferInputSource.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/ClosedFileInputSource.cc -o libqpdf/ClosedFileInputSource.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/ContentNormalizer.cc -o libqpdf/ContentNormalizer.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/FileInputSource.cc -o libqpdf/FileInputSource.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/InputSource.cc -o libqpdf/InputSource.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/InsecureRandomDataProvider.cc -o libqpdf/InsecureRandomDataProvider.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/JSON.cc -o libqpdf/JSON.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/MD5.cc -o libqpdf/MD5.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/OffsetInputSource.cc -o libqpdf/OffsetInputSource.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/Pipeline.cc -o libqpdf/Pipeline.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/Pl_AES_PDF.cc -o libqpdf/Pl_AES_PDF.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/Pl_ASCII85Decoder.cc -o libqpdf/Pl_ASCII85Decoder.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/Pl_ASCIIHexDecoder.cc -o libqpdf/Pl_ASCIIHexDecoder.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/Pl_Buffer.cc -o libqpdf/Pl_Buffer.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/Pl_Concatenate.cc -o libqpdf/Pl_Concatenate.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/Pl_Count.cc -o libqpdf/Pl_Count.o
  g++ -std=gnu++14 -I"/usr/local/lib/R/include" -DNDEBUG -Iinclude -Ilibqpdf -I'/home/cdsw/.local/lib/R/4.1/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libqpdf/Pl_DCT.cc -o libqpdf/Pl_DCT.o
  In file included from libqpdf/Pl_DCT.cc:1:
  include/qpdf/Pl_DCT.hh:27:10: fatal error: jpeglib.h: No such file or directory
  27 | #include <jpeglib.h>
  | ^~~~~~~~~~~
  compilation terminated.
  make: *** [/usr/local/lib/R/etc/Makeconf:175: libqpdf/Pl_DCT.o] Error 1
  ERROR: compilation failed for package ‘qpdf’
• removing ‘/home/cdsw/.local/lib/R/4.1/library/qpdf’
  ERROR: dependency ‘qpdf’ is not available for package ‘pdftools’
• removing ‘/home/cdsw/.local/lib/R/4.1/library/pdftools’

The downloaded source packages are in
‘/tmp/RtmpehArrv/downloaded_packages’
Warning messages:
1: In install.packages("pdftools") :
installation of package ‘qpdf’ had non-zero exit status
2: In install.packages("pdftools") :
installation of package ‘pdftools’ had non-zero exit status

[jeroen]

sudo apt-get install libjpeg-dev

[Ludo-vic-D]

Dont get privilège to execute apt-get on this environement (docker image)
https://imgur.com/a/oQXc7LQ
any suggestion?