v0.1.15

What's Changed

• DEP: Pyinstaller bump to 5.1 by @AhmetCanSolak in #187
• GUI: main layout refactor by @AhmetCanSolak in #190
• BUG: GUI layout name bug by @AhmetCanSolak in #191
• CONTRIBUTING guidelines update by @AhmetCanSolak in #194
• IT-CNN default patch_size value by @AhmetCanSolak in #195
• CLI: Split channels by @AhmetCanSolak in #197
• Contributing guideline updates by @AhmetCanSolak in #199
• napari version bump to 0.4.15 by @AhmetCanSolak in #206
• DOC: it level docstrings refactor by @AhmetCanSolak in #201
• Restoration variant option bug fix and refactor by @AhmetCanSolak in #203
• Making dependency pinnings bundle only by @AhmetCanSolak in #202
• torch input and target images tiling by @AhmetCanSolak in #192
• build: osx hook fix by @AhmetCanSolak in #208
• Torch unet n2t training loop refactor by @AhmetCanSolak in #210
• Torch unet maskout by @AhmetCanSolak in #209
• BUG: GUI: denoise tab selection persistence by @AhmetCanSolak in #212
• pytest general test speed-up by @AhmetCanSolak in #211
• Torch unet fstring fixes by @AhmetCanSolak in #213
• Torch original unet by @AhmetCanSolak in #216
• Torch unet residual by @AhmetCanSolak in #215
• Torch model demos by @AhmetCanSolak in #218
• Torch Linear Scaling UNet by @AhmetCanSolak in #217
• Relaxing torch dependency version by @AhmetCanSolak in #219
• Relaxing gdown version by @AhmetCanSolak in #220
• Misc. test fixes by @AhmetCanSolak in #221
• Relaxing click dependency version by @AhmetCanSolak in #224
• Removing googledrivedownloader from dependencies by @AhmetCanSolak in #225
• Relaxing nd2reader pinning by @AhmetCanSolak in #226
• Relaxing memoization version by @AhmetCanSolak in #229
• Relaxing numexpr version by @AhmetCanSolak in #228
• Relaxing scipy version by @AhmetCanSolak in #227
• Removing unused code by @AhmetCanSolak in #230
• Catboost regressor refactor by @AhmetCanSolak in #222
• Relaxing pynndescent version by @AhmetCanSolak in #231
• CB regressor bug fix by @AhmetCanSolak in #232
• Fourier Shell Correlation by @AhmetCanSolak in #223
• fixed min max number of estimators by @royerloic in #234
• GUI: new egg chamber example dataset by @AhmetCanSolak in #237
• DOC: Example datasets gallery by @AhmetCanSolak in #236
• removing unused util misc modules by @AhmetCanSolak in #240
• New random patch generation function by @AhmetCanSolak in #239
• BUG: restoration cnn channel_axes parameter check fix by @AhmetCanSolak in #241
• Torch unet n2s by @AhmetCanSolak in #214
• torch random pixel masking by @AhmetCanSolak in #242
• zarr version is unpinned by @AhmetCanSolak in #243
• Torch jinet implementation by @AhmetCanSolak in #196
• CLI: fsc command by @AhmetCanSolak in #246
• Torch tests demos refactor by @AhmetCanSolak in #245
• BUG: 3D jinet bug patch by @AhmetCanSolak in #244
• psnr ssim print statements for demos and tests by @AhmetCanSolak in #247
• Deprecate Tensorflow related code by @AhmetCanSolak in #249
• Py310 support by @AhmetCanSolak in #248
• imagio version fix by @AhmetCanSolak in #253
• numexpr to numba by @AhmetCanSolak in #252
• Versioning for docs by @AhmetCanSolak in #254
• sphinx-multiversion dependency added by @AhmetCanSolak in #256
• Torch it cnn by @AhmetCanSolak in #250
• fix on n2t tests by @AhmetCanSolak in #258
• github labeler by @AhmetCanSolak in #257
• BUG: fix for cnn restoration by @AhmetCanSolak in #260
• Heavy tests action by @AhmetCanSolak in #261
• Removing numba deprecation warnings by @AhmetCanSolak in #262

Full Changelog: v0.1.14...v0.1.15

v0.1.14

What's Changed

• bundle urls updated upon new release by @AhmetCanSolak in #157
• Current fixes by @royerloic in #158
• DOC: OpenCell Use Case by @AhmetCanSolak in #159
• Update README.md by @AhmetCanSolak in #160
• DOC: build warnings resolutions by @AhmetCanSolak in #162
• DOC: removing why_aydin.rst from build checks by @AhmetCanSolak in #164
• Restoration: Unused code refactor by @AhmetCanSolak in #165
• CLI: lucyrichardson refactor by @AhmetCanSolak in #166
• CLI: Click tests for CLI commands by @AhmetCanSolak in #132
• DOC: Classic denoisers API reference by @AhmetCanSolak in #168
• GUI: Removing pyqt5 imports by @AhmetCanSolak in #169
• GUI: Super class call bug fix by @AhmetCanSolak in #170
• GUI: range label for cropping sliders by @AhmetCanSolak in #171
• DEP: numexpr version to 2.8.1 by @AhmetCanSolak in #175
• CLI: psnr command typo fixes by @AhmetCanSolak in #177
• CLI: mse command by @AhmetCanSolak in #178
• CLI: test bug fix by @AhmetCanSolak in #179
• DEP: Tensorflow version to 2.8.1, Keras to 2.8.0 by @AhmetCanSolak in #174
• IO: Tests cannot find hela dataset by @AhmetCanSolak in #180
• DOC: Use case updates by @AhmetCanSolak in #182
• DOC: changing use case order by @AhmetCanSolak in #183
• Latest fixes by @royerloic in #181
• DOC: follow-up after use case updates by @AhmetCanSolak in #184
• CI: protobuf install fix by @AhmetCanSolak in #185
• DEP: numba to 0.55.1 by @AhmetCanSolak in #176
• BUILD: Adding missing hiddenimports by @AhmetCanSolak in #186
• BUG: Latest protobuf import error resolution by @AhmetCanSolak in #188
• DOC: Chicken embryo use case by @AhmetCanSolak in #189

Full Changelog: v0.1.13...v0.1.14

v0.1.13

What's Changed

• pyinstaller version upgraded by @AhmetCanSolak in #89
• Bundle links updated after new release by @AhmetCanSolak in #90
• GUI: editable output paths by @AhmetCanSolak in #84
• BUG: cli lucyrichardson psf reading bug fix by @AhmetCanSolak in #92
• GUI: Removing train_on field from data model by @AhmetCanSolak in #93
• DOC: gui output folder tutorial by @AhmetCanSolak in #94
• Update LICENSE.txt by @AhmetCanSolak in #96
• DOC: sphinx-copybuton by @AhmetCanSolak in #98
• UNet model in pytorch by @AhmetCanSolak in #79
• Scipy version fix by @AhmetCanSolak in #100
• Temporary nn structure by @AhmetCanSolak in #101
• GUI: Load pretrained models by @AhmetCanSolak in #97
• Restoration module level load model by @AhmetCanSolak in #103
• TEST: adding saveload tests on restoration level by @AhmetCanSolak in #104
• BUG: GUI pretrained model usage by @AhmetCanSolak in #102
• Removing default txt by @AhmetCanSolak in #107
• GUI: Removing code duplication on denoise tab refreshes by @AhmetCanSolak in #108
• Pypi download badge by @AhmetCanSolak in #109
• LGBM save model fix by @AhmetCanSolak in #111
• Improvements to aydin docstrings by @royerloic in #110
• numpy sqrt refactor by @AhmetCanSolak in #112
• DOC: Perceptron regressor updates by @AhmetCanSolak in #113
• Improve classic optimiser by @royerloic in #114
• Github actions to do style and lint checks by @AhmetCanSolak in #117
• Flake fixes by @AhmetCanSolak in #120
• Github actions test task by @AhmetCanSolak in #119
• Bug fix on classic restoration implementation by @AhmetCanSolak in #121
• Dim analysis by @royerloic in #118
• GUI: text wrapping fixes by @AhmetCanSolak in #95
• FGR blind_spots argumet duplication fix by @AhmetCanSolak in #123
• Fixing bugs by @royerloic in #124
• CI: Test task dependency fix by @AhmetCanSolak in #125
• GUI: Cropping tabs Z step update by @AhmetCanSolak in #127
• CI: capturing only related output by @AhmetCanSolak in #128
• GUI: Text wrapping for parameter names by @AhmetCanSolak in #130
• CatBoost Regressor learning_rate seed by @AhmetCanSolak in #129
• More improvements by @royerloic in #126
• Classic denoisers interpolation mode default value by @AhmetCanSolak in #134
• Refactor: namedtuple defaults for classic denoisers by @AhmetCanSolak in #135
• GUI: Disabling spatial features by @AhmetCanSolak in #136
• GUI: Auto crop for training data Z and T dimensions by @AhmetCanSolak in #139
• GUI: Spatial feature disabling bug fix by @AhmetCanSolak in #140
• Classic restoration ImageTranslator level args by @AhmetCanSolak in #142
• Catboost version bump to 1.0.5 by @AhmetCanSolak in #141
• CLI: psnr and ssim commands by @AhmetCanSolak in #145
• Minor fixes -- actually not so minor... by @royerloic in #144
• BUG: Dimension Analysis by @AhmetCanSolak in #147
• Update CONTRIBUTING.md by @AhmetCanSolak in #149
• BUG: CLI hyperstack command file output by @AhmetCanSolak in #150
• Final fixes before new release by @royerloic in #148
• DEP: distributed by @AhmetCanSolak in #153
• Even faster cropping by @royerloic in #152
• BUG: super fast crop zoom call fix by @AhmetCanSolak in #154
• BUG: Build scipy missing hooks by @AhmetCanSolak in #155

Full Changelog: v0.1.12...v0.1.13

v0.1.12

What's Changed

• updating bundle links by @AhmetCanSolak in #57
• adding options json page on docs by @AhmetCanSolak in #60
• CLI: enabling batch axes and channel axes arguments on CLI by @AhmetCanSolak in #62
• GUI: handling mistyped parameters by @AhmetCanSolak in #65
• DOC: cli tutorial on how to pass batch dimensions by @AhmetCanSolak in #66
• GUI: separating npr viewer and model definitions by @AhmetCanSolak in #67
• BUILD: linux fixes by @AhmetCanSolak in #68
• BUILD: osx build fixes after required package updates by @AhmetCanSolak in #69
• BUILD: Bug fix after scikit-learn version upgrade by @AhmetCanSolak in #71
• BUILD: Windows fixes related to imageio and numba by @AhmetCanSolak in #72
• importlib-metadata version upgraded by @AhmetCanSolak in #73
• Refactor: bringing back ArrayLike type annotations to it.transforms by @AhmetCanSolak in #75
• GUI: Basic/Advanced modes toggle feature by @AhmetCanSolak in #64
• GUI: Hiding advanced processing tabs when basic mode is active by @AhmetCanSolak in #76
• Refactor: Misc gui code refactor by @AhmetCanSolak in #77
• Refactor: It cnn file refactor by @AhmetCanSolak in #78
• GUI: Saving processing related details by @AhmetCanSolak in #80
• BUG: Aydin CLI was not saving model by @AhmetCanSolak in #81
• DOC: Contributing guideline update by @AhmetCanSolak in #83
• BUG: CLI was crashing with multiple images by @AhmetCanSolak in #86
• CLI: output folder option by @AhmetCanSolak in #85
• DOC: CLI tutorial on output folder arg by @AhmetCanSolak in #87
• BUG: Fixing after breaking regressor name refactor by @AhmetCanSolak in #88

Full Changelog: v0.1.11...v0.1.12

v0.1.11

What's Changed

• version update to v0.1.9 by @AhmetCanSolak in #38
• doi-addition-to-docs by @AhmetCanSolak in #39
• Update issue templates by @AhmetCanSolak in #41
• cli tutorial fixes by @AhmetCanSolak in #45
• Docs fixes demo fixes numba features fix by @AhmetCanSolak in #46
• update on README.md by @AhmetCanSolak in #47
• Update README.md by @Abdur-rahmaanJ in #42
• DOC: install add libomp warning added to install page by @AhmetCanSolak in #48
• Adding image.sc links by @AhmetCanSolak in #49
• adding doi to cli and gui by @AhmetCanSolak in #50
• adding links across docs gui and repository by @AhmetCanSolak in #51
• dependency version updates by @AhmetCanSolak in #52
• docs api tutorials import fixes on restoration modules by @AhmetCanSolak in #54
• adding py39 disclaimer to getting started section in docs by @AhmetCanSolak in #55
• osx build splash screen fix by @AhmetCanSolak in #56

New Contributors

• @Abdur-rahmaanJ made their first contribution in #42

Full Changelog: v0.1.9...v0.1.11

v0.1.9

What's Changed

• docs-adding-bundle-links by @AhmetCanSolak in #32
• gui-example-datasets-renaming by @AhmetCanSolak in #33
• adding-precommit-config by @AhmetCanSolak in #34
• docs-connecting-missing-links by @AhmetCanSolak in #35
• Hyers by @AhmetCanSolak in #36
• docs-making-github-issue-link-work by @AhmetCanSolak in #37

Full Changelog: v0.1.8...v0.1.9

v0.1.8

First public release

What's Changed

• migrating-to-github by @AhmetCanSolak in #24
• Connected links on both summary and denoise tabs by @AhmetCanSolak in #25
• docs-adding-summary-ss-on-hardware-req-page by @AhmetCanSolak in #26
• gui-denoise-tab-fix-explanation-for-n2s-variants by @AhmetCanSolak in #27
• gui-br-tag-cleaning by @AhmetCanSolak in #28
• gui-extended-bold-text-prevented by @AhmetCanSolak in #29
• setuptools-related-updates by @AhmetCanSolak in #30
• Release related updates by @AhmetCanSolak in #31

New Contributors

• @royerloic made their first contribution in #14
• @li-li-github made their first contribution in #16

Full Changelog: https://github.com/royerlab/aydin/commits/v0.1.8