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Check that the pullup is enabled for E6. C2 and C3 are similar to E6, try them too.
Schematic for E7 looks good, check that there is a pull-up to 5V (R85)
Also you can test D3, F3.
trying to test the following digital inputs on rev H
using stim board
four lines work, the two failing lines are
Gpio::H144_IN_D_4; // E6
andGpio::H144_IN_D_AUX4; // E7
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