v0.3

Compter version 0.3 adds a number of new useful functions to the
program:

Added --subset option to Compter which subsets input files at regular intervals to overcome potential problems if reads are ordered in a particular way in the input file (for example, the reads at the start of a file may only be from the 5-prime end of chromosome 1).

Heatmap generation is problematic with large datasets. Compter now subsets the data matrix file and uses this subset for generating the heatmap. Data is taken at regular intervals throughout the file (approx. max = 1,000 lines for EACH SAMPLE).

v0.2

Compter version 0.2 adds a number of new useful functions to the
program:

• You can now calculate frequencies rather than enrichments by
  setting the --background option to 'none'

• You can choose to not cluster the columns of the plot by setting
  the --nogroup option

• You can output to svg instead of png by setting the --svg option

NOTE: There is a bug in older versions of R which means the --svg
option may crash R on some platforms. If compter fails when using
--svg put works when outputting PNG files then try updating to
R >=3.4.0 to fix this.

Also note that for large datasets the size of SVG files produced
by the program might be quite large (many megabytes). There's not
much we can do about this - there are a lot of objects to draw and
SVG is a chatty language.

v0.1.1

This is a bugfix release which fixes a display bug which caused the
scale bar on the heatmap to be reversed. The calculated enrichment
values in the text output were correct, but the values shown in the
plot were all inversed (enriched was shown as depleted and vice versa)

v0.1

RELEASE NOTES FOR v0.1

This is the initial release of the software. All major functions are
present and the program works successfully on our test data and on
several other projects we've tried it on. It's ready for wider testing.