collectri: add sign decision and include as an edge attr

saezlab · May 23, 2023 · f6415f7 · f6415f7
1 parent 8d7102c
commit f6415f7
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Showing 2 changed files with 9 additions and 2 deletions.
diff --git a/pypath/inputs/collectri.py b/pypath/inputs/collectri.py
@@ -113,6 +113,7 @@ def collectri_raw(
             'tf_category',
             'resources',
             'pubmed',
+            'sign_decision',
             'target_type',
         ),
     )
@@ -149,6 +150,7 @@ def collectri_raw(
                 tf_category = l[3],
                 resources = l[4].replace('DoRothEA_A', 'DoRothEA-A'),
                 pubmed = l[5],
+                sign_decision = l[6],
                 target_type = 'mirna' if mmirna else 'protein',
             )
         )
@@ -183,6 +185,7 @@ def collectri_interactions(
             'tf_category',
             'resources',
             'pubmed',
+            'sign_decision',
             'target_type',
         ),
     )

diff --git a/pypath/resources/data_formats.py b/pypath/resources/data_formats.py
@@ -2501,7 +2501,8 @@ def _pathwaycommons_single_resource(resource, transcription = False):
         references = (5, ';'),
         header = False,
         extra_edge_attrs = {
-            'tf_category': 3
+            'tf_category': 3,
+            'sign_decision': 6
         },
         extra_node_attrs_a = {
             'tf_category': 3
@@ -2807,7 +2808,10 @@ def _pathwaycommons_single_resource(resource, transcription = False):
         resource = (4, ';'),
         references = (5, ';'),
         header = False,
-        extra_edge_attrs = {},
+        extra_edge_attrs = {
+            'tf_category': 3,
+            'sign_decision': 6
+        },
         extra_node_attrs_a = {
             'tf_category': 3
         },