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Updates to linbox-1.7.0, givaro-4.2.0, fflas-ffpack-2.5.0 #8140

Updates to linbox-1.7.0, givaro-4.2.0, fflas-ffpack-2.5.0

Updates to linbox-1.7.0, givaro-4.2.0, fflas-ffpack-2.5.0 #8140

Workflow file for this run

name: Build & Test
on:
pull_request:
merge_group:
push:
branches:
- master
- develop
# Ignore pushes on tags to prevent two uploads of codecov reports
tags-ignore: ['**']
workflow_dispatch:
# Allow to run manually
inputs:
platform:
description: 'Platform'
required: true
default: 'ubuntu-focal-standard'
docker_tag:
description: 'Docker tag'
required: true
default: 'dev'
concurrency:
# Cancel previous runs of this workflow for the same branch
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
get_ci_fixes:
runs-on: ubuntu-latest
steps:
- name: Checkout
id: checkout
uses: actions/checkout@v4
- name: Merge CI fixes from sagemath/sage
run: |
.ci/merge-fixes.sh
env:
GH_TOKEN: ${{ github.token }}
SAGE_CI_FIXES_FROM_REPOSITORIES: ${{ vars.SAGE_CI_FIXES_FROM_REPOSITORIES }}
- name: Store CI fixes in upstream artifact
run: |
mkdir -p upstream
if git format-patch --stdout test_base > ci_fixes.patch; then
cp ci_fixes.patch upstream/
fi
- uses: actions/upload-artifact@v3
with:
path: upstream
name: upstream
build:
runs-on: ubuntu-latest
container: ghcr.io/sagemath/sage/sage-${{ github.event.inputs.platform || 'ubuntu-focal-standard' }}-with-targets:${{ github.event.inputs.docker_tag || 'dev'}}
needs: [get_ci_fixes]
steps:
- name: Checkout
id: checkout
uses: actions/checkout@v4
- name: Update system packages
id: prepare
run: |
export PATH="build/bin:$PATH"
eval $(sage-print-system-package-command auto update)
eval $(sage-print-system-package-command auto --spkg --yes --no-install-recommends install git)
- name: Add prebuilt tree as a worktree
id: worktree
run: |
set -ex
git config --global --add safe.directory $(pwd)
.ci/retrofit-worktree.sh worktree-image /sage
- name: Download upstream artifact
uses: actions/download-artifact@v3
with:
path: upstream
name: upstream
- name: Apply CI fixes from sagemath/sage
# After applying the fixes, make sure all changes are marked as uncommitted changes.
run: |
if [ -r upstream/ci_fixes.patch ]; then
(cd worktree-image && git commit -q -m "current changes" --allow-empty -a && git am; git reset --quiet old; git add -N .) < upstream/ci_fixes.patch
fi
- name: Incremental build
id: incremental
run: |
# Now re-bootstrap and build. The build is incremental because we were careful with the timestamps.
./bootstrap && make build
working-directory: ./worktree-image
env:
MAKE: make -j2 --output-sync=recurse
SAGE_NUM_THREADS: 2
- name: Build modularized distributions
if: (success() || failure()) && steps.worktree.outcome == 'success'
run: make V=0 tox && make SAGE_CHECK=no pypi-wheels
working-directory: ./worktree-image
env:
MAKE: make -j2 --output-sync=recurse
SAGE_NUM_THREADS: 2
- name: Static code check with pyright
if: (success() || failure()) && steps.worktree.outcome == 'success'
uses: jakebailey/pyright-action@v1
with:
version: 1.1.332
# Many warnings issued by pyright are not yet helpful because there is not yet enough type information.
no-comments: true
working-directory: ./worktree-image
env:
# To avoid out of memory errors
NODE_OPTIONS: --max-old-space-size=8192
- name: Static code check with pyright (annotated)
if: (success() || failure()) && steps.worktree.outcome == 'success'
uses: jakebailey/pyright-action@v1
with:
version: 1.1.332
# Issue errors
no-comments: false
level: error
working-directory: ./worktree-image
env:
# To avoid out of memory errors
NODE_OPTIONS: --max-old-space-size=8192
- name: Clean (fallback to non-incremental)
id: clean
if: (success() || failure()) && steps.worktree.outcome == 'success' && steps.incremental.outcome != 'success'
run: |
set -ex
./bootstrap && make doc-clean doc-uninstall sagelib-clean && git clean -fx src/sage && ./config.status
working-directory: ./worktree-image
env:
MAKE: make -j2
SAGE_NUM_THREADS: 2
- name: Build
# This step is needed because building the modularized distributions installs some optional packages,
# so the editable install of sagelib needs to build the corresponding optional extension modules.
id: build
if: (success() || failure()) && (steps.incremental.outcome == 'success' || steps.clean.outcome == 'success')
run: |
make build
working-directory: ./worktree-image
env:
MAKE: make -j2 --output-sync=recurse
SAGE_NUM_THREADS: 2
# Testing
- name: Test changed files (sage -t --new)
if: (success() || failure()) && steps.build.outcome == 'success'
run: |
# We run tests with "sage -t --new"; this only tests the uncommitted changes.
./sage -t --new -p2
working-directory: ./worktree-image
env:
MAKE: make -j2 --output-sync=recurse
SAGE_NUM_THREADS: 2
- name: Test modularized distributions
if: (success() || failure()) && steps.build.outcome == 'success'
run: make V=0 tox && make pypi-wheels-check
working-directory: ./worktree-image
env:
MAKE: make -j2 --output-sync=recurse
SAGE_NUM_THREADS: 2
- name: Pytest
if: contains(github.ref, 'pytest')
run: |
../sage -python -m pip install coverage pytest-xdist
../sage -python -m coverage run -m pytest -c tox.ini --doctest-modules || true
working-directory: ./worktree-image/src
env:
# Increase the length of the lines in the "short summary"
COLUMNS: 120
- name: Test all files (sage -t --all --long)
if: (success() || failure()) && steps.build.outcome == 'success'
run: |
../sage -python -m pip install coverage
../sage -python -m coverage run ./bin/sage-runtests --all --long -p2 --random-seed=286735480429121101562228604801325644303
working-directory: ./worktree-image/src
- name: Prepare coverage results
if: (success() || failure()) && steps.build.outcome == 'success'
run: |
./venv/bin/python3 -m coverage combine src/.coverage/
./venv/bin/python3 -m coverage xml
mkdir -p coverage-report
mv coverage.xml coverage-report/
working-directory: ./worktree-image
- name: Upload coverage to codecov
if: (success() || failure()) && steps.build.outcome == 'success'
uses: codecov/codecov-action@v3
with:
directory: ./worktree-image/coverage-report