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As pointed out by gh-kliem in ticket #29967, doctesting the interface to R yields some warnings, even though all tests pass:
~/sage % ./sage -t src/sage/interfaces/r.py
Running doctests with ID 2021-01-28-19-03-19-0ac9e573.
Git branch: develop
Using --optional=build,dochtml,homebrew,pip,sage,sage_spkg
Doctesting 1 file.
R[write to console]: Warning messages:
R[write to console]: 1:
R[write to console]: In sage10 + sage6 :
R[write to console]:
R[write to console]: longer object length is not a multiple of shorter object length
R[write to console]: 2:
R[write to console]: In sqrt(sage10) :
R[write to console]: NaNs produced
R[write to console]: 3:
R[write to console]: In sqrt(sage4) :
R[write to console]: NaNs produced
sage -t --warn-long 42.2 --random-seed=0 src/sage/interfaces/r.py
[257 tests, 3.17 s]
----------------------------------------------------------------------
All tests passed!
Perhaps a user of R can say whether these warnings are revealing anything that needs to be fixed.
(These warnings were reported with --random-seed=151058820726654196682836430928254760259, but I get them even without specifying a seed.)
The warnings are expected, so there is no problem here, so this ticket should be closed as invalid.
The doctest is:
The following command generates a new vector `v` of length 11 constructed
by adding together (element by element) `2x` repeated 2.2 times, `y`
repeated just once, and 1 repeated 11 times::
sage: v = 2*x+y+1; v # optional - rpy2
[1] 32.2 17.8 10.3 20.2 66.1 21.8 22.6 12.8 16.9 50.8 43.5
This is intentionally adding two vectors whose lengths are not multiples of each other: the length of 2*x is 5, and the length of y is 11.
2 and 3) The doctests are:
sage: r(-17).sqrt() # optional - rpy2
[1] NaN
The conversion can handle "not a number", infintiy, imaginary values and
missing values:
sage: r(-17).sqrt().sage() # optional - rpy2
nan
Both are intentionally creating a NaN value by taking the square root of a negative number.
Related ticket: #34134 (typo "infintiy" in docstring of r interface)
As pointed out by gh-kliem in ticket #29967, doctesting the interface to R yields some warnings, even though all tests pass:
Perhaps a user of R can say whether these warnings are revealing anything that needs to be fixed.
(These warnings were reported with
--random-seed=151058820726654196682836430928254760259
, but I get them even without specifying a seed.)Component: interfaces
Keywords: R, statistics
Reviewer: Dave Morris
Issue created by migration from https://trac.sagemath.org/ticket/31300
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