Modularization of sagelib: Distributions sagemath-{brial,combinat,eclib,flint,gap,giac,glpk,graphs,groups,homfly,lcalc,libbraiding,libecm,linbox,modules,mpmath,ntl,pari,plot,polyhedra,schemes,singular,standard-no-symbolics,symbolics}

.ci/write-dockerfile.sh

@@ -269,7 +269,7 @@ $ADD Makefile VERSION.txt COPYING.txt condarc.yml README.md bootstrap bootstrap-
 $ADD config/config.rpath /new/config/config.rpath
 $ADD src/doc/bootstrap /new/src/doc/bootstrap
 $ADD src/bin /new/src/bin
-$ADD src/Pipfile.m4 src/pyproject.toml src/requirements.txt.m4 src/setup.cfg.m4 src/VERSION.txt /new/src/
+$ADD src/Pipfile.m4 src/pyproject.toml src/requirements.txt.m4 src/VERSION.txt /new/src/
 $ADD m4 /new/m4
 $ADD pkgs /new/pkgs
 $ADD build /new/build

.github/workflows/docker.yml

@@ -28,6 +28,7 @@ on:
            "debian-bullseye",
            "debian-bookworm",
            "debian-trixie",
+           "debian-trixie-python3.12",
            "debian-sid",
            "linuxmint-20.1",
            "linuxmint-20.2",
@@ -45,6 +46,7 @@ on:
            "fedora-36",
            "fedora-37",
            "fedora-38",
+           "fedora-38-python3.12",
            "fedora-39",
            "fedora-40",
            "centos-7-devtoolset-gcc_11",
@@ -58,8 +60,10 @@ on:
            "archlinux-latest",
            "opensuse-15.5-gcc_11-python3.11",
            "opensuse-tumbleweed-python3.10",
-           "opensuse-tumbleweed",
+           "opensuse-tumbleweed-python3.11",
+           "opensuse-tumbleweed-python3.12",
            "conda-forge-python3.11",
+           "conda-forge",
            "ubuntu-bionic-gcc_8-i386",
            "debian-bullseye-i386",
           ]

.github/workflows/doctest-problem-matcher.json

@@ -0,0 +1,17 @@
+{
+    "problemMatcher": [
+        {
+            "owner": "doctest-failure",
+            "severity": "error",
+            "pattern": [
+                {
+                    "regexp": "^(\\[(\\S*)-[0-9.a-z]\\] )?File \"(\\S*)\", line ([0-9]*), in (\\S*)\\s*$(\\[(\\S*)-[0-9.a-z]\\] )?^(Failed example):",
+                    "code": 2,
+                    "file": 3,
+                    "line": 4,
+                    "message": 7,
+                }
+            ]
+        }
+    ]
+}

.gitignore

@@ -52,9 +52,10 @@
 /src/environment-optional-3.11.yml
 
 /src/setup.cfg
-/src/requirements.txt
+/src/requirements*.txt
 /src/Pipfile
 /src/Pipfile.lock
+/src/pyproject.toml
 /Pipfile
 /Pipfile.lock
 
@@ -185,28 +186,20 @@ __pycache__/
 build/temp.*/
 build/bin/sage-build-env-config
 
-# Generated files in build
-build/pkgs/cypari/version_requirements.txt
-build/pkgs/cysignals/version_requirements.txt
-build/pkgs/cython/version_requirements.txt
-build/pkgs/gmpy2/version_requirements.txt
-build/pkgs/jupyter_core/version_requirements.txt
-build/pkgs/memory_allocator/version_requirements.txt
-build/pkgs/numpy/version_requirements.txt
-build/pkgs/pkgconfig/version_requirements.txt
-build/pkgs/pplpy/version_requirements.txt
-build/pkgs/setuptools/version_requirements.txt
-build/pkgs/wheel/version_requirements.txt
+# Vendored on sdist/install
+/src/sage/libs/mpmath/_vendor/mpmath*
 
 # Generated files in the top-level source trees
 /pkgs/*/build
+/pkgs/*/cython_debug
 /pkgs/*/dist
 /pkgs/*/MANIFEST
 /pkgs/*/*.egg-info
 /pkgs/*/.tox
 /pkgs/*/venv*
 /pkgs/*/.venv*
 
+/pkgs/sage-conf/pyproject.toml
 /pkgs/sage-conf_pypi/sage_root/config.log
 /pkgs/sage-conf_pypi/sage_root/config.status
 /pkgs/sage-conf_pypi/sage_root/local/
@@ -227,16 +220,33 @@ build/pkgs/wheel/version_requirements.txt
 /pkgs/sagemath-categories/setup.cfg
 /pkgs/sagemath-environment/setup.cfg
 /pkgs/sagemath-repl/setup.cfg
-/pkgs/sagemath-objects/pyproject.toml
-/pkgs/sagemath-bliss/pyproject.toml
-/pkgs/sagemath-coxeter3/pyproject.toml
-/pkgs/sagemath-mcqd/pyproject.toml
-/pkgs/sagemath-meataxe/pyproject.toml
-/pkgs/sagemath-sirocco/pyproject.toml
-/pkgs/sagemath-tdlib/pyproject.toml
-/pkgs/sagemath-categories/pyproject.toml
-/pkgs/sagemath-environment/pyproject.toml
-/pkgs/sagemath-repl/pyproject.toml
+/pkgs/sagemath-polyhedra/setup.cfg
+/pkgs/sagemath-combinat/setup.cfg
+/pkgs/sagemath-graphs/setup.cfg
+/pkgs/sagemath-groups/setup.cfg
+/pkgs/sagemath-modules/setup.cfg
+/pkgs/sagemath-schemes/setup.cfg
+/pkgs/sagemath-plot/setup.cfg
+/pkgs/sagemath-symbolics/setup.cfg
+/pkgs/sagemath-standard-no-symbolics/setup.cfg
+/pkgs/sagemath-flint/setup.cfg
+/pkgs/sagemath-gap/setup.cfg
+/pkgs/sagemath-giac/setup.cfg
+/pkgs/sagemath-glpk/setup.cfg
+/pkgs/sagemath-homfly/setup.cfg
+/pkgs/sagemath-linbox/setup.cfg
+/pkgs/sagemath-mpmath/setup.cfg
+/pkgs/sagemath-ntl/setup.cfg
+/pkgs/sagemath-pari/setup.cfg
+/pkgs/sagemath-singular/setup.cfg
+/pkgs/sagemath-brial/setup.cfg
+/pkgs/sagemath-eclib/setup.cfg
+/pkgs/sagemath-lcalc/setup.cfg
+/pkgs/sagemath-libbraiding/setup.cfg
+/pkgs/sagemath-libecm/setup.cfg
+
+/pkgs/*/pyproject.toml
+
 /pkgs/sagemath-objects/requirements*.txt
 /pkgs/sagemath-bliss/requirements*.txt
 /pkgs/sagemath-coxeter3/requirements*.txt
@@ -247,7 +257,43 @@ build/pkgs/wheel/version_requirements.txt
 /pkgs/sagemath-categories/requirements*.txt
 /pkgs/sagemath-environment/requirements*.txt
 /pkgs/sagemath-repl/requirements*.txt
+/pkgs/sagemath-polyhedra/requirements*.txt
+/pkgs/sagemath-combinat/requirements*.txt
+/pkgs/sagemath-graphs/requirements*.txt
+/pkgs/sagemath-groups/requirements*.txt
+/pkgs/sagemath-modules/requirements*.txt
+/pkgs/sagemath-plot/requirements*.txt
+/pkgs/sagemath-schemes/requirements*.txt
+/pkgs/sagemath-symbolics/requirements*.txt
+/pkgs/sagemath-standard-no-symbolics/requirements*.txt
+/pkgs/sagemath-flint/requirements*.txt
+/pkgs/sagemath-gap/requirements*.txt
+/pkgs/sagemath-giac/requirements*.txt
+/pkgs/sagemath-glpk/requirements*.txt
+/pkgs/sagemath-homfly/requirements*.txt
+/pkgs/sagemath-linbox/requirements*.txt
+/pkgs/sagemath-mpmath/requirements*.txt
+/pkgs/sagemath-ntl/requirements*.txt
+/pkgs/sagemath-pari/requirements*.txt
+/pkgs/sagemath-singular/requirements*.txt
+/pkgs/sagemath-brial/requirements*.txt
+/pkgs/sagemath-eclib/requirements*.txt
+/pkgs/sagemath-lcalc/requirements*.txt
+/pkgs/sagemath-libbraiding/requirements*.txt
+/pkgs/sagemath-libecm/requirements*.txt
+
 /pkgs/sagemath-categories/MANIFEST.in
+/pkgs/sagemath-polyhedra/MANIFEST.in
+/pkgs/sagemath-combinat/MANIFEST.in
+/pkgs/sagemath-graphs/MANIFEST.in
+/pkgs/sagemath-groups/MANIFEST.in
+/pkgs/sagemath-modules/MANIFEST.in
+/pkgs/sagemath-plot/MANIFEST.in
+/pkgs/sagemath-schemes/MANIFEST.in
+/pkgs/sagemath-symbolics/MANIFEST.in
+/pkgs/sagemath-standard-no-symbolics/MANIFEST.in
+
+/pkgs/sagemath-mpmath/vendor.txt
 
 # same for old locations - before Issue #31577
 /build/pkgs/*/src/build
@@ -273,6 +319,9 @@ src/*.egg-info/
 /src/bin/sage-env-config
 /src/bin/sage-src-env-config
 
+# Generated by sage-generate-meson
+/src/**/meson.build
+
 # Virtual environments
 /venv
 src/.env
@@ -298,3 +347,8 @@ src/.coverage/
 # git worktree
 worktree*
 **/worktree*
+
+# Pyodide
+**/.pyodide-xbuildenv
+/emsdk/
+/venv-pyodide*/

Makefile

@@ -178,17 +178,6 @@ bootstrap-clean:
 	rm -f src/Pipfile
 	rm -f src/requirements.txt
 	rm -f src/setup.cfg
-	rm -f build/pkgs/cypari/version_requirements.txt
-	rm -f build/pkgs/cysignals/version_requirements.txt
-	rm -f build/pkgs/cython/version_requirements.txt
-	rm -f build/pkgs/gmpy2/version_requirements.txt
-	rm -f build/pkgs/jupyter_core/version_requirements.txt
-	rm -f build/pkgs/memory_allocator/version_requirements.txt
-	rm -f build/pkgs/numpy/version_requirements.txt
-	rm -f build/pkgs/pkgconfig/version_requirements.txt
-	rm -f build/pkgs/pplpy/version_requirements.txt
-	rm -f build/pkgs/setuptools/version_requirements.txt
-	rm -f build/pkgs/wheel/version_requirements.txt
 
 # Remove absolutely everything which isn't part of the git repo
 maintainer-clean: distclean bootstrap-clean