Skip to content

3.0.3
Compare
Choose a tag to compare
@lbergelson lbergelson released this 16 Nov 19:16
· 35 commits to master since this release
3.0.3
This tag was signed with the committer’s verified signature.
lbergelson Louis Bergelson
GPG key ID: CDB73EA73CD9CF1E
Learn about vigilant mode.
7346f5b
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

Serious Known issue

We've introduced a serious bug by making the VCF sort order more stable in many situations when outputting vcfs. This introduced the side effect of causing many valid VCF's to be incorrectly flagged as invalid when reading existing VCFS.

We recommend against updating to this version, prefer 3.0.4 or 3.0.2

What's Changed

  • Use allele info in VariantContext comparisons for stable sorts by @clintval in #1593
  • Fix HtsCRAMCodec test data provider. by @cmnbroad in #1632
  • Allow the BAM index to be up to 5 seconds older than the BAM before e… by @tfenne in #1634

Full Changelog: 3.0.2...3.0.3

Contributors

tfenne, clintval, and cmnbroad
Assets 2