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Minor grammer changes.
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whitwham committed Jun 29, 2021
1 parent d925c24 commit ca2d348
Showing 1 changed file with 12 additions and 11 deletions.
23 changes: 12 additions & 11 deletions NEWS
Original file line number Diff line number Diff line change
Expand Up @@ -16,34 +16,34 @@ Features and Updates
* Transparently treat FASTQ as unmapped data as if it was SAM, BAM or CRAM.
(#1156)

* Add GCP requester pays bucket access. Thanks to @indraniel.
* Added GCP requester pays bucket access. Thanks to @indraniel.
(#1255)

* Make mpileup's overlap removal choose a random sequence.
* Made mpileup's overlap removal choose a random sequence.
(#1273; fixes samtools/bcftools#1459)

* Permit platform specific BAQ parameters. It will also select long-read
* Now permits platform specific BAQ parameters. This also selects long-read
parameters for read lengths bigger than 1kb. This helps bcftools mpileup call
SNPs on PacBio CCS reads.
(#1275)

* Improve bcf_remove_allele_set. Fixes a bug that stopped iteration over
* Improved bcf_remove_allele_set. This fixes a bug that stopped iteration over
alleles prematurely, marks removed alleles as 'missing' and does automatic
lazy unpacking.
(#1288; fixes #1259)

* [CRAM] Improve compression metrics for unsorted files. This improves the
* [CRAM] Improved compression metrics for unsorted files. This improves the
choice of codecs when handling unsorted data.
(#1291)

* Initialise the missing entries of the linear index in reverse order.
* Now initialisea the missing entries of the linear index in reverse order.
Populates empty linear index entries from the right rather from the left.
The new hts_bin_level function computes the index level of a bin.
Thanks to @carsonh for reporting the issue.
(#1286; fixes #486)

* Related to the above, the new method, hts_idx_nseq, returns the total number
of contigs from an index.
* Related to the above, the new method, hts_idx_nseq, now returns the total
number of contigs from an index.
(#1295 and #1299)

* Added bracket handling to bcf_hdr_parse_line. Thanks to Alberto Casas Orrtiz.
Expand All @@ -60,16 +60,17 @@ These are compiler, configuration and makefile based changes.
* Some fixes to address GCC 11.1 warnings.
(#1280, #1284, #1285; fixes #1283)

* Support building HTSlib in a separate directory. Thanks to John Marshall.
* Supports building HTSlib in a separate directory. Thanks to John Marshall.
(#1277; fixes #231)

* Support building HTSlib on MinGW 32-bit environments. Thanks to John Marshall.
* Supports building HTSlib on MinGW 32-bit environments. Thanks to
John Marshall.
(#1301)

Bug fixes
---------

* Remove compressBound assertions on opening bgzf files. Thanks to
* Removed compressBound assertions on opening bgzf files. Thanks to
Gurt Hulselmans for reporting the issue.
(#1258; fixed #1257)

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