Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Adds a new option to
samtools split
command, which allows the user to split reads into distinct files by a custom read tag (with a string type value). E.g.samtools split -d hc align.sam
, where some of the reads inalign.sam
have a tag in the formathc:Z:<string value>
.Options
-u
is also available with-d
.Change the return type of
auto_index
method fromchar*
toint
, since a separate pointer to the index file name is no longer needed.Depends on samtools/htslib#1055