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Make calmd run faster on non-position-sorted data #1723

Merged
merged 1 commit into from
Oct 3, 2022
Merged

Make calmd run faster on non-position-sorted data #1723

merged 1 commit into from
Oct 3, 2022

Commits on Sep 21, 2022

  1. Make calmd run faster on non-position-sorted data 

    Add caching so that calmd doesn't continuously have to reread
reference sequences if the input does not go through them
sequentially.  As caching requires extra memory, it is only enabled
if calmd detects an attempt to go backwards in the reference
dictionary.  Thus processing a position-sorted file uses no more
space than before, while processing other orderings is now much
faster.
    @daviesrob
    daviesrob committed Sep 21, 2022
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