Use of uninitialized value in File::Slurper and Encode.pm

[tseemann]

Note sure what these relate to:

2015/11/05 09:32:30 Running command: pan_genome_post_analysis -o clustered_proteins -p pan_genome.fa -s gene_presen
sence.csv -c _clustered.clstr  -i /mnt/seq/JOBS/J2014-06814/nullarbor.modern/roary/PGjpiKTwDC//_gff_files -f /mnt/s
BS/J2014-06814/nullarbor.modern/roary/PGjpiKTwDC//_fasta_files -t 11  --dont_create_rplots   -v  -j Parallel --proc
s 8 --group_limit 50000 -cd 99
Use of uninitialized value in require at /bio/perl5/lib/perl5/File/Slurper.pm line 32.
2015/11/05 09:32:32 Reinflate clusters
2015/11/05 09:32:32 Split groups with paralogs
Use of uninitialized value in require at /bio/perl5/lib/perl5/x86_64-linux-thread-multi/Encode.pm line 59.

[colindaven]

roary -f output3 -e -t 4 -p 10 --mafft *.gff

I second this

Use of uninitialized value in require at /usr/local/share/perl/5.18.2/File/Slurper.pm line 32.
Use of uninitialized value in require at /usr/lib/perl/5.18/Encode.pm line 60.
Use of uninitialized value in require at (eval 1047) line 1.