Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Improved dependancy checking #209

Merged
merged 7 commits into from
Nov 25, 2015
Merged

Improved dependancy checking #209

merged 7 commits into from
Nov 25, 2015

Conversation

andrewjpage
Copy link
Member

Fixes the following issues @tseemann raised:

#207
#206
#205
#193

The format of the summary_statistics file has been updated to add in a few tabs which may break other peoples downstream scripts.

Core genes  (99% <= strains <= 100%)    1
Soft core genes (95% <= strains < 99%)  1
Shell genes (15% <= strains < 95%)  24
Cloud genes (0% <= strains < 15%)   4
Total genes (0% <= strains <= 100%) 30

andrewjpage added a commit that referenced this pull request Nov 25, 2015
@andrewjpage
Merge pull request #209 from andrewjpage/improved_tool_checking
c6d9bd1 
Improved dependancy checking
@andrewjpage andrewjpage merged commit c6d9bd1 into sanger-pathogens:master Nov 25, 2015
@tseemann
Copy link
Contributor

Of course Nullarbor will break now. I deserve everything I submit!

@andrewjpage
Copy link
Member Author

:)
On 25 Nov 2015 23:34, "Torsten Seemann" notifications@github.com wrote:

Of course Nullarbor will break now. I deserve everything I submit!

—
Reply to this email directly or view it on GitHub
#209 (comment)
.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

None yet
2 participants
@andrewjpage @tseemann