test_geographic_crop_with_resize failing locally

[astrojuanlu]

Not sure what's going on:

$ pytest -s --lf
==================================================================================== test session starts =====================================================================================
platform linux -- Python 3.7.5, pytest-5.3.4, py-1.8.1, pluggy-0.13.1 -- /home/juanlu/.pyenv/versions/3.7.5/envs/telluric37/bin/python3.7
cachedir: .pytest_cache
rootdir: /home/juanlu/Development/telluric/telluric, inifile: setup.cfg
plugins: cov-2.8.1
collected 43 items / 42 deselected / 1 selected                                                                                                                                              
run-last-failure: rerun previous 1 failure (skipped 119 files)

tests/test_georaster_tiling.py::GeoRasterCropTest::test_geographic_crop_with_resize FAILED

========================================================================================== FAILURES ==========================================================================================
_____________________________________________________________________ GeoRasterCropTest.test_geographic_crop_with_resize _____________________________________________________________________

self = <test_georaster_tiling.GeoRasterCropTest testMethod=test_geographic_crop_with_resize>

    def test_geographic_crop_with_resize(self):
        coords = mercantile.xy_bounds(*tiles[17])
        raster = self.read_only_virtual_geo_raster_wgs84()
        vector = GeoVector(Polygon.from_bounds(*coords), crs=WEB_MERCATOR_CRS)
        x_ex_res, y_ex_res = convert_resolution_from_meters_to_deg(
            self.metric_affine[6], MERCATOR_RESOLUTION_MAPPING[17])
>       cropped = raster.crop(vector, (x_ex_res, y_ex_res))

tests/test_georaster_tiling.py:388: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
telluric/georaster.py:1120: in crop
    masked=masked, bands=bands, resampling=resampling)
telluric/georaster.py:1194: in pixel_crop
    bands=bands, resampling=resampling)
telluric/georaster.py:1880: in get_window
    array = raster.read(bands, **read_params)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

>   ???
E   TypeError: 'numpy.float64' object cannot be interpreted as an integer

rasterio/_io.pyx:332: TypeError

This is the output of pip freeze:

affine==2.3.0
alabaster==0.7.12
attrs==19.3.0
Babel==2.8.0
backcall==0.1.0
bleach==3.1.0
boltons==20.0.0
branca==0.3.1
certifi==2019.11.28
chardet==3.0.4
Click==7.0
click-plugins==1.1.1
cligj==0.5.0
coverage==5.0.3
cycler==0.10.0
decorator==4.4.1
defusedxml==0.6.0
docutils==0.16
dsnparse==0.1.15
entrypoints==0.3
Fiona==1.8.13
folium==0.10.1
idna==2.8
imageio==2.6.1
imagesize==1.2.0
importlib-metadata==1.4.0
ipykernel==5.1.3
ipyleaflet==0.12.1
ipython==7.11.1
ipython-genutils==0.2.0
ipywidgets==7.5.1
jedi==0.15.2
Jinja2==2.10.3
jsonschema==3.2.0
jupyter-client==5.3.4
jupyter-core==4.6.1
kiwisolver==1.1.0
lxml==4.4.2
MarkupSafe==1.1.1
matplotlib==3.1.2
mercantile==1.1.2
mistune==0.8.4
more-itertools==8.1.0
munch==2.5.0
mypy==0.761
mypy-extensions==0.4.3
nbconvert==5.6.1
nbformat==5.0.3
nbsphinx==0.5.0
notebook==6.0.2
numpy==1.18.1
packaging==20.0
pandas==0.25.3
pandocfilters==1.4.2
parso==0.5.2
pexpect==4.7.0
pickleshare==0.7.5
Pillow==7.0.0
pluggy==0.13.1
prometheus-client==0.7.1
prompt-toolkit==3.0.2
ptyprocess==0.6.0
py==1.8.1
pycodestyle==2.5.0
Pygments==2.5.2
pyparsing==2.4.6
pyproj==2.4.2.post1
pyrsistent==0.15.7
pytest==5.3.4
pytest-cov==2.8.1
python-dateutil==2.8.1
pytz==2019.3
pyzmq==18.1.1
rasterio==1.1.2
requests==2.22.0
Send2Trash==1.5.0
Shapely==1.6.4.post2
six==1.14.0
snowballstemmer==2.0.0
snuggs==1.4.7
Sphinx==2.3.1
sphinx-rtd-theme==0.4.3
sphinxcontrib-applehelp==1.0.1
sphinxcontrib-devhelp==1.0.1
sphinxcontrib-htmlhelp==1.0.2
sphinxcontrib-jsmath==1.0.1
sphinxcontrib-qthelp==1.0.2
sphinxcontrib-serializinghtml==1.1.3
terminado==0.8.3
testpath==0.4.4
tornado==6.0.3
traitlets==4.3.3
traittypes==0.2.1
typed-ast==1.4.1
typing-extensions==3.7.4.1
urllib3==1.25.7
wcwidth==0.1.8
webencodings==0.5.1
widgetsnbextension==3.5.1
xarray==0.14.1
zipp==2.0.0

[astrojuanlu]

It seems that there's some sort of caching going on. However, it's been a while since I last ran these tests and it's not entirely clear to me how to reset it. Doing a rm -rf * && git restore . didn't work, but creating a new Python environment and a clean telluric clone did. It would be nice to have a clean command somewhere, whatever it has to do, or leverage temporary directories for the tests as much as possible.

[astrojuanlu]

Cannot reproduce, closing.