merge expression and pct of multiple genes in one

[paolo-kunderfranco]

Dear All,
I would like to visualize in my clusters avg.exp.scale and pct.exp through a DotPlot of a set of genes, but I would like to output only one column, that should average the avg.exp.scale and pct.exp of all genes, for example

I created a list of genes

mhc.genes <- grep(pattern = "^H2-", x = rownames(x = subset_tac_4_weeks_res12@data), value = TRUE)

now I would like to plot with DotPlot function the average values of all genes present in my list, any suggestion?

Best
Paolo

[leonfodoulian]

Hi,

Please refer to issue #528 for an example of how to do this. You can easily replace Seurat::FeaturePlot() with Seurat::DotPlot().

Best,
Leon