Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Question: "duplicates" error in running TSNE #749

Closed
ethannchen opened this issue Sep 3, 2018 · 1 comment
Closed

Question: "duplicates" error in running TSNE #749

ethannchen opened this issue Sep 3, 2018 · 1 comment
Labels
Analysis Question duplicate This issue or pull request already exists

Comments

@ethannchen
Copy link

I am handling with data generated by BD Rhapsody platform. The input is a gene expressing matrix. The problem is when I ran the "RunTSNE" function, it reported:

Error in Rtsne.default(X = as.matrix(x = data.use), dims = dim.embed, :
Remove duplicates before running TSNE.

I've checked for the gene list and cell indices, there was no duplicate gene or cell index included.
Anyone know this issue?
Thanks!
@ethannchen ethannchen changed the title duplicates error in running TSNE Question: "duplicates" error in running TSNE Sep 3, 2018
@andrewwbutler
Copy link
Collaborator

Please see #85, #167, #499.

@andrewwbutler andrewwbutler added Analysis Question duplicate This issue or pull request already exists labels Sep 6, 2018
@hepcat72 hepcat72 mentioned this issue Jan 27, 2020
Open
saketkc added a commit that referenced this issue Jul 6, 2023
@saketkc
Merge pull request #749 from satijalab/revert-739-fix/fix_foldchange
a989986 
Revert "Fix fold change calculation for assays"
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
Analysis Question duplicate This issue or pull request already exists
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@andrewwbutler @ethannchen