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Seurat v4.1.1 #5905

Merged
merged 53 commits into from May 2, 2022
Merged

Seurat v4.1.1 #5905

merged 53 commits into from May 2, 2022

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mojaveazure
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Patch release to support new Cells argument list and replace default.stringsAsFactors(); please see our NEWS file for more details

timoast and others added 30 commits December 3, 2021 15:40
This is a very minor commit to add newline characters to the end of some object definitions.

Previously, if we inspected an AnchorSet object in the console then we got:

An AnchorSet object containing <some number> anchors between the reference and query Seurat objects. 
 This can be used as input to TransferData.> 

i.e. the prompt is on the same line as the last line of the message. I presume that this is not deliberate? If it was deliberate then sorry for the pointless change! I made this change for objects with the TransferAnchorSet, IntegrationAnchorSet, ModalityWeights, and SCTModel signatures.

Thanks,
George
Add newlines to end of object definitions
Use repr=T as giveCsparse has been deprecated
Update changelog
Co-authored-by: Paul Hoffman <mojaveazure@users.noreply.github.com>
Co-authored-by: Paul Hoffman <mojaveazure@users.noreply.github.com>
Co-authored-by: Paul Hoffman <mojaveazure@users.noreply.github.com>
@mojaveazure mojaveazure merged commit a1294c4 into master May 2, 2022
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7 participants