While the tutorial in the main Readme should help you get up and running the documents in this folder are meant to give some insight into the internal structure and working of the programs.
- Read generation POS and CIGAR algorithm
- Alignment scoring
- Alignment Analysis Format
- Read model format
cd mitty
docker build -f containerization/dockerfile -t images.sbgenomics.com/kghosesbg/mitty3:latest .
Run the docker image with the demo scripts folder mounted
docker run -ti --rm -v /Users/kghose/Code/mitty-demo-data:/data images.sbgenomics.com/kghosesbg/mitty3:latest
And then run individual test scripts to check if everything works on the Linux container
docker push images.sbgenomics.com/kghosesbg/mitty3:latest
(via https://packaging.python.org/tutorials/distributing-packages)
python setup.py sdist
python setup.py bdist_wheel
# Fill out ~/.pypirc if you haven't already
twine upload dist/*