Genomics Compliance Suite (GCS) is a Shiny app built by Seven Bridges to create, validate, and browse BioCompute Objects.
This repo offers the source code for the app's Docker image, including the Dockerfile and the app built by the Seven Bridges team. The app features BioCompute Object (BCO) creation (manually or by importing from CWL workflows), BCO checksum/schema validators, PDF report generator, and an interactive BCO browser.
README gives a brief introduction to pull the Docker image and run the app locally. For detailed usage of the app and more deployment options, please check our PDF user manual.
How to run the app locally
First of all, please make sure that Docker is installed in your system, and the
docker commands are available from the terminal. If not, here is the official installation guide.
Pull or build the image
To pull the pre-built Docker image from its Docker Hub repo, use:
docker pull sevenbridges/gcs
Alternatively, you can choose to build the image, which could take a few minutes:
git clone https://github.com/sbg/gcs.git cd gcs docker build . -t gcs
Run the container
If the image was pulled from Docker Hub, use
docker run --rm -p 3838:3838 --name sb sevenbridges/gcs
If the image was built locally, use
docker run --rm -p 3838:3838 --name sb gcs
Log into the app
After the container is running
http://127.0.0.1:3838in your web browser.
- Use the username/password
sevenbridgesto log in.
Clean up the container and image after running
docker rm -f sb docker rmi sevenbridges/gcs
docker rm -f sb docker rmi gcs
© 2019 Seven Bridges Genomics, Inc. All rights reserved.
This project is licensed under the GNU Affero General Public License v3.