A validation step for generated diagrams and/or an automatic correction for editing is needed #9
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enhancement
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Validation of the SBGN files can be now checked using libSBGN 3.0: https://github.com/sbgn/libsbgn/releases/tag/milestone3.1 |
ibalaur
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May 26, 2019
The converter also validates the generated SBGN file by using high level validation provided by the libSBGN 3.0 library. (Issue #9)
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The converter validates now the generated SBGN file by using high level validation provided by the libSBGN 3.0 library: 75cba62. |
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Currently, the tool checkes the generated SBGN file using the isValid function from libSBGN (SbgnUtil class). The user can check validity of the biological diagram by using other SBGN-support tools, such as the SBGN-ED -> Tools -> Validate within the VANTED software.
However, integrating a validation step for the generated SBGN biological diagram wuold help user. Also, a correction step during editing (e.g. adding bend points to represent ports automatically) would be of benefit for user's experience.
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